Pathway Listing for Salmonella enterica enterica serovar Typhimurium str. LT2 Sorted by Pathway Score

Overview

This page presents some of the evidence used to determine which pathways are present in Salmonella enterica enterica serovar Typhimurium str. LT2. For each pathway, we show

• A diagram (the pathway evidence glyph) summarizing the presence of enzymes for each reaction in the pathway
• The normalized pathway score computed for the pathway
• The total number of reactions in the pathway
• The number of pathway reactions which an enzyme is present in Salmonella enterica enterica serovar Typhimurium str. LT2
• The number of those reactions that appear in other pathways in Salmonella enterica enterica serovar Typhimurium str. LT2 (and hence are not unique to the particular pathway)
• The number of reactions designated in MetaCyc as key indicators for the presence of this pathway, for which enzymes are present in Salmonella enterica enterica serovar Typhimurium str. LT2
• Whether this organism is within the taxonomic groups (if any) designated in MetaCyc as the taxonomic range of this pathway

Key to Pathway Evidence Glyph Edge Colors

	Enzyme present. An enzyme for this reaction has been identified in this organism
	Enzyme absent. An enzyme for this reaction has not been identified in this organism
	Unique reaction. This reaction is unique to this pathway in the MetaCyc database
	Enzyme present by hole filler. An enzyme for this reaction has been identified in this organism by the Pathway Hole Filler
	Orphan reaction. No sequenced enzyme from any domain of life is known for this reaction
	Key reaction. The reaction has been designated a key reaction of this pathway
	Spontaneous/other. Used for spontaneous reactions, and for lines that do not denote reactions (e.g., denoting repetition in polymerization pathways)

Pathway Summary Statistics

Fraction of genes devoted to metabolism	1497 of 4714 (32%)
Base pathways	394
Total reactions in the base pathways	1123
Base pathway reactions that are pathway holes	100 (9%)
Base pathway reactions that are not pathway holes	1023 (91%)

Pathways Sorted by Pathway Score

Pathway score is a number between 0 and 1 inclusive that indicates the likelihood that a pathway is present; a higher number indiciates a higher likelihood. The pathway score is not a probability. Pathway scores are computed at pathway prediction time and are not updated later, such as due to editing of a pathway.

A pathway might have no pathway score if its presence was inferred by a curator, or if it is a super-pathway (super-pathways are not scored, and are not included in this page).

Pathways with a score less than the prediction threshold (default=0.15) are typically not predicted as present. An exception to this rule is a case where MetaCyc contains experimental evidence that the pathway exists in the exact organism for which pathway inference was performed, in which case the pathway will be imported from MetaCyc no matter its score.

Pathway	Pathway Glyph	Pathway Score	Total Rxns	Rxns Present in Salmonella enterica enterica serovar Typhimurium str. LT2	Rxns Present in Other Pwys	Other Pwys	Key Rxns Present	In Taxonomic Range?	Links
gentisate degradation I		na	3	1	0	(none)	0 of 1	yes
N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation		na	na	na	0	(none)	0 of 0	yes
glycerol-3-phosphate to hydrogen peroxide electron transport		na	2	2	0	(none)	0 of 0	yes
enterobacterial common antigen biosynthesis		na	6	4	0	(none)	0 of 0	yes
coenzyme A biosynthesis I (prokaryotic)		na	4	4	0	(none)	1 of 1	yes
glycolysis II (from fructose 6-phosphate)		na	11	11	6	mixed acid fermentation superpathway of glucose and xylose degradation Entner-Doudoroff pathway I	0 of 0	yes
glycine biosynthesis II		na	1	1	0	(none)	0 of 0	NO
Salmonella enterica serotype O:4 O antigen biosynthesis (group B1)		na	6	6	0	(none)	2 of 2	yes
5,6-dimethylbenzimidazole biosynthesis I (aerobic)		na	3	2	0	(none)	0 of 1	yes
ammonia assimilation cycle III		na	2	1	0	(none)	0 of 0	yes
S-adenosyl-L-methionine cycle I		na	5	4	3	aspartate superpathway superpathway of S-adenosyl-L-methionine biosynthesis L-cysteine biosynthesis VI (from L-methionine)	2 of 2	yes
N-(1-deoxy-D-fructos-1-yl)-L-asparagine degradation		na	5	4	0	(none)	0 of 0	yes
ATP biosynthesis		na	1	1	0	(none)	0 of 0	yes
NAD salvage pathway II (PNC IV cycle)		na	4	4	0	(none)	0 of 0	yes
NADH to hydrogen peroxide electron transfer		na	2	2	0	(none)	0 of 0	yes
TCA cycle I (prokaryotic)		0.137	10	8	6	mixed acid fermentation	1 of 1	yes
guanosine nucleotides degradation III		0.151	4	2	0	(none)	0 of 0	yes
L-arginine degradation I (arginase pathway)		0.174	3	2	0	(none)	0 of 0	yes
[2Fe-2S] iron-sulfur cluster biosynthesis		0.176	10	4	0	(none)	0 of 0	NO
D-galactosamine and N-acetyl-D-galactosamine degradation		0.176	4	2	0	(none)	0 of 0	yes
(aminomethyl)phosphonate degradation		0.196	8	3	0	(none)	0 of 0	yes
glycerol degradation II		0.212	2	1	0	(none)	0 of 0	yes
allantoin degradation to ureidoglycolate I (urea producing)		0.212	2	1	0	(none)	0 of 0	yes
L-cysteine biosynthesis III (from L-homocysteine)		0.212	4	1	0	(none)	0 of 0	yes
glycerol degradation V		0.212	2	1	0	(none)	0 of 0	yes
arsenate detoxification II (glutaredoxin)		0.212	2	1	0	(none)	1 of 2	NO
(1,4)-beta-D-xylan degradation		0.212	2	1	0	(none)	0 of 0	yes
selenate reduction		0.22	5	1	0	(none)	0 of 0	yes
D-erythronate degradation II		0.22	4	4	0	(none)	0 of 0	yes
D-glucarate degradation II		0.233	3	1	0	(none)	1 of 1	yes
D-galactarate degradation II		0.233	3	1	0	(none)	1 of 1	yes
L-proline biosynthesis III		0.234	5	4	0	(none)	0 of 0	NO
L-ornithine biosynthesis II		0.247	4	4	0	(none)	0 of 0	NO
tRNA-uridine 2-thiolation (bacteria)		0.249	8	4	0	(none)	2 of 2	yes
folate transformations I		0.251	12	9	0	(none)	0 of 0	yes
inosine 5'-phosphate degradation		0.267	4	3	0	(none)	0 of 0	yes
protein S-nitrosylation and denitrosylation		0.293	5	1	0	(none)	0 of 0	yes
periplasmic disulfide bond formation		0.293	3	1	0	(none)	0 of 0	yes
heptadecane biosynthesis		0.293	3	1	0	(none)	0 of 0	yes
L-threonate degradation		0.3	4	4	0	(none)	0 of 0	yes
UTP and CTP dephosphorylation I		0.325	5	3	0	(none)	0 of 0	yes
indole-3-acetate biosynthesis VI (bacteria)		0.327	3	2	0	(none)	1 of 1	yes
chlorosalicylate degradation		0.33	7	2	0	(none)	1 of 1	yes
ethylene biosynthesis III (microbes)		0.34	7	2	1	reactive oxygen species degradation	1 of 1	yes
adenosine nucleotides degradation II		0.352	5	3	0	(none)	1 of 1	yes
L-isoleucine degradation I		0.363	6	3	0	(none)	0 of 0	yes
L-valine degradation I		0.365	8	3	0	(none)	0 of 0	yes
2-hydroxypenta-2,4-dienoate degradation		0.37	3	2	1	mixed acid fermentation	0 of 0	yes
pyrimidine deoxyribonucleotides dephosphorylation		0.388	3	2	1	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	0 of 0	yes
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I		0.388	5	4	0	(none)	1 of 1	yes
dissimilatory sulfate reduction II (to thiosulfate)		0.402	5	3	0	(none)	0 of 0	yes
stachyose degradation		0.429	7	7	1	colanic acid building blocks biosynthesis	0 of 0	NO
oleate beta-oxidation		0.434	3	2	0	(none)	0 of 0	yes
citrate lyase activation		0.437	5	3	0	(none)	0 of 0	yes
oxidized GTP and dGTP detoxification		0.44	4	1	0	(none)	0 of 0	yes
cyclohexane-1-carboxylate degradation (anaerobic)		0.44	2	1	0	(none)	0 of 0	yes
peptidoglycan maturation (meso-diaminopimelate containing)		0.44	12	6	0	(none)	0 of 0	yes
hydrogen sulfide biosynthesis I		0.44	2	1	0	(none)	0 of 0	yes
ethylene glycol degradation		0.44	2	1	0	(none)	0 of 0	yes
beta-D-glucuronide and D-glucuronate degradation		0.44	3	1	0	(none)	0 of 0	yes
mannosylglycerate biosynthesis I		0.44	2	1	0	(none)	0 of 0	yes
thioredoxin pathway		0.44	2	1	0	(none)	0 of 0	yes
pseudouridine degradation		0.44	2	1	0	(none)	0 of 0	yes
methylerythritol phosphate pathway II		0.452	9	9	0	(none)	1 of 1	NO
L-glutamine degradation I		0.457	1	1	0	(none)	0 of 0	yes
L-alanine biosynthesis III		0.459	1	1	0	(none)	0 of 0	yes
acetate and ATP formation from acetyl-CoA I		0.459	2	2	2	mixed acid fermentation pyruvate fermentation to acetate IV	0 of 0	yes
4-hydroxyphenylpyruvate biosynthesis		0.462	1	1	0	(none)	0 of 0	yes
pyruvate fermentation to ethanol III		0.463	3	3	3	mixed acid fermentation pyruvate fermentation to acetate I	0 of 0	yes
glycine biosynthesis I		0.466	1	1	0	(none)	0 of 0	yes
geranyl diphosphate biosynthesis		0.466	1	1	0	(none)	0 of 0	yes
glycolysis III (from glucose)		0.472	11	11	6	mixed acid fermentation Entner-Doudoroff pathway I superpathway of glucose and xylose degradation	1 of 1	yes
D-mannose degradation		0.478	1	1	0	(none)	0 of 1	yes
L-aspartate biosynthesis		0.478	1	1	0	(none)	0 of 0	yes
4-hydroxybenzoate biosynthesis II (bacteria)		0.478	1	1	0	(none)	0 of 0	yes
L-aspartate degradation I		0.478	1	1	0	(none)	0 of 0	yes
glycolysis I (from glucose 6-phosphate)		0.48	12	12	6	mixed acid fermentation superpathway of glucose and xylose degradation Entner-Doudoroff pathway I	0 of 0	yes
pyrimidine deoxyribonucleosides salvage		0.485	5	4	1	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	0 of 0	yes
UDP-alpha-D-glucose biosynthesis I		0.488	2	2	0	(none)	0 of 0	yes
arginine dependent acid resistance		0.488	1	1	0	(none)	0 of 0	yes
L-lysine degradation I		0.488	1	1	0	(none)	0 of 1	yes
pentose phosphate pathway (non-oxidative branch)		0.5	5	5	1	superpathway of glucose and xylose degradation	1 of 1	yes
acetate conversion to acetyl-CoA		0.503	1	1	0	(none)	0 of 0	yes
UDP-alpha-D-galactose biosynthesis		0.503	1	1	1	colanic acid building blocks biosynthesis	0 of 0	yes
L-glutamine biosynthesis I		0.503	1	1	0	(none)	0 of 0	yes
myo-inositol degradation I		0.503	7	5	1	myo-, chiro- and scyllo-inositol degradation	1 of 1	yes
formaldehyde oxidation VII (THF pathway)		0.507	4	3	0	(none)	0 of 0	yes
NADH to cytochrome bo oxidase electron transfer II		0.507	2	2	0	(none)	0 of 0	yes
inosine-5'-phosphate biosynthesis II		0.513	5	5	0	(none)	1 of 1	NO
4-aminobutanoate degradation II		0.514	2	2	0	(none)	0 of 0	yes
gluconeogenesis I		0.518	13	13	5	mixed acid fermentation Entner-Doudoroff pathway I superpathway of glucose and xylose degradation	0 of 0	yes
pyruvate fermentation to ethanol I		0.522	3	3	3	mixed acid fermentation pyruvate fermentation to acetate IV	0 of 0	yes
L-proline biosynthesis I		0.526	4	3	0	(none)	0 of 0	yes
adenine and adenosine salvage I		0.526	2	2	0	(none)	0 of 0	yes
L-glutamate biosynthesis III		0.526	1	1	0	(none)	0 of 0	yes
L-glutamate degradation I		0.526	1	1	0	(none)	0 of 0	yes
S-adenosyl-L-methionine biosynthesis		0.526	1	1	0	(none)	0 of 0	yes
L-malate degradation II		0.526	1	1	0	(none)	0 of 0	yes
L-alanine biosynthesis II		0.526	1	1	0	(none)	0 of 0	yes
sulfoquinovose degradation I		0.528	5	5	0	(none)	1 of 1	yes
4-aminobutanoate degradation I		0.534	2	2	0	(none)	0 of 0	yes
N10-formyl-tetrahydrofolate biosynthesis		0.537	9	9	1	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	0 of 0	yes
NADH to cytochrome bd oxidase electron transfer II		0.545	2	2	0	(none)	0 of 0	yes
heme b biosynthesis II (anaerobic)		0.549	4	3	2	superpathway of heme b biosynthesis from uroporphyrinogen-III	1 of 1	yes
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde		0.55	4	3	0	(none)	0 of 0	yes
hydrogen to fumarate electron transfer		0.558	2	2	1	mixed acid fermentation	0 of 0	yes
glycerol-3-phosphate to fumarate electron transfer		0.558	2	2	1	mixed acid fermentation	0 of 0	yes
L-serine degradation		0.565	3	2	0	(none)	0 of 0	yes
long-chain fatty acid activation		0.565	1	1	0	(none)	0 of 0	yes
D-lactate to cytochrome bo oxidase electron transfer		0.566	2	2	0	(none)	0 of 0	yes
putrescine biosynthesis I		0.566	2	2	0	(none)	0 of 0	yes
L-arginine degradation III (arginine decarboxylase/agmatinase pathway)		0.566	2	2	0	(none)	0 of 0	yes
folate polyglutamylation		0.575	5	4	0	(none)	0 of 0	yes
pyrimidine ribonucleosides salvage I		0.584	3	2	0	(none)	1 of 1	yes
GDP-mannose biosynthesis		0.584	4	4	0	(none)	0 of 0	yes
hydroxymethylpyrimidine salvage		0.585	2	2	0	(none)	0 of 0	yes
5-oxo-L-proline metabolism		0.587	6	2	0	(none)	0 of 0	yes
glutathione-peroxide redox reactions		0.587	3	2	1	reactive oxygen species degradation	0 of 0	yes
autoinducer AI-2 degradation		0.587	3	3	0	(none)	0 of 0	yes
D-galactose degradation I (Leloir pathway)		0.602	5	5	1	colanic acid building blocks biosynthesis	0 of 0	yes
N-acetylglucosamine degradation I		0.604	2	2	0	(none)	0 of 0	yes
UDP-N-acetyl-D-glucosamine biosynthesis I		0.614	5	5	0	(none)	0 of 0	yes
D-arabinose degradation I		0.615	4	3	0	(none)	1 of 1	yes
L-methionine biosynthesis II (plants)		0.63	6	5	0	(none)	2 of 2	NO
L-phenylalanine degradation II (anaerobic)		0.632	3	3	0	(none)	0 of 0	yes
glycolate and glyoxylate degradation I		0.64	4	3	0	(none)	1 of 1	yes
nitrate reduction IX (dissimilatory)		0.644	2	2	0	(none)	0 of 0	yes
L-glutamate degradation X		0.644	1	1	0	(none)	0 of 0	yes
D-gluconate degradation		0.644	1	1	0	(none)	0 of 0	yes
hydrogen to trimethylamine N-oxide electron transfer		0.644	2	2	0	(none)	0 of 0	yes
hydrogen to dimethyl sulfoxide electron transfer		0.644	2	2	0	(none)	0 of 0	yes
L-glutamate biosynthesis II		0.644	1	1	0	(none)	0 of 0	yes
flavin biosynthesis I (bacteria and plants)		0.649	9	9	0	(none)	1 of 1	yes
L-threonine degradation IV		0.653	2	2	1	mixed acid fermentation	0 of 0	yes
formaldehyde assimilation II (assimilatory RuMP Cycle)		0.653	9	9	1	superpathway of glucose and xylose degradation	2 of 2	yes
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate		0.656	2	2	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleotides de novo biosynthesis I		0.658	9	9	8	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	1 of 1	yes
heme b biosynthesis I (aerobic)		0.659	4	4	4	superpathway of heme b biosynthesis from uroporphyrinogen-III	1 of 1	yes
lipoprotein posttranslational modification		0.66	4	3	0	(none)	0 of 2	yes
glycerol-3-phosphate to cytochrome bo oxidase electron transfer		0.667	2	2	0	(none)	0 of 0	yes
pyruvate to cytochrome bo oxidase electron transfer		0.667	2	2	0	(none)	0 of 0	yes
glyoxylate cycle		0.674	6	6	4	mixed acid fermentation	2 of 2	yes
NAD phosphorylation and transhydrogenation		0.686	2	2	0	(none)	0 of 0	yes
trans, trans-farnesyl diphosphate biosynthesis		0.687	3	3	0	(none)	1 of 1	yes
ethanol degradation II		0.693	3	3	1	mixed acid fermentation	1 of 1	yes
fatty acid elongation -- saturated		0.704	5	4	0	(none)	0 of 0	yes
guanine and guanosine salvage		0.706	2	2	0	(none)	0 of 0	yes
CDP-diacylglycerol biosynthesis I		0.706	4	4	0	(none)	0 of 0	yes
lipoate salvage I		0.706	2	2	0	(none)	0 of 0	yes
pyruvate to cytochrome bd oxidase electron transfer		0.706	2	2	0	(none)	0 of 0	yes
pyridoxal 5'-phosphate salvage I		0.709	5	5	0	(none)	0 of 0	yes
parathion degradation		0.715	2	1	0	(none)	1 of 1	yes
myo-inositol biosynthesis		0.715	2	1	0	(none)	1 of 1	yes
L-histidine degradation I		0.723	4	3	0	(none)	0 of 0	yes
glycogen degradation II		0.726	6	5	0	(none)	0 of 0	yes
ethanol degradation I		0.736	2	2	2	mixed acid fermentation	1 of 1	yes
thiamine diphosphate biosynthesis II (Bacillus)		0.745	2	2	1	thiamine salvage II	0 of 1	yes
autoinducer AI-2 biosynthesis I		0.748	5	2	2	L-cysteine biosynthesis VI (from L-methionine)	1 of 1	yes
D-glucosaminate degradation		0.749	3	2	0	(none)	0 of 0	yes
pyruvate fermentation to ethanol II		0.758	2	2	1	mixed acid fermentation	1 of 1	yes
D-galactarate degradation I		0.76	4	4	0	(none)	0 of 0	yes
D-glucarate degradation I		0.76	4	4	0	(none)	0 of 0	yes
L-tyrosine biosynthesis I		0.782	3	3	0	(none)	1 of 1	yes
purine ribonucleosides degradation		0.784	6	6	0	(none)	0 of 0	yes
L-phenylalanine biosynthesis I		0.803	3	3	0	(none)	1 of 1	yes
L-citrulline degradation		0.809	3	2	2	allantoin degradation IV (anaerobic) L-arginine biosynthesis I (via L-ornithine)	1 of 1	yes
pyrimidine deoxyribonucleotide phosphorylation		0.823	4	4	3	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	0 of 0	yes
dTDP-L-rhamnose biosynthesis		0.825	4	4	0	(none)	1 of 1	yes
fatty acid beta-oxidation I		0.827	7	7	0	(none)	0 of 0	yes
D-sorbitol degradation II		0.846	1	1	0	(none)	0 of 0	yes
UDP-alpha-D-glucuronate biosynthesis (from UDP-glucose)		0.846	1	1	0	(none)	0 of 0	yes
putrescine biosynthesis III		0.846	1	1	0	(none)	0 of 0	yes
mannitol degradation I		0.846	1	1	0	(none)	0 of 0	yes
S-methyl-5'-thioadenosine degradation IV		0.846	1	1	0	(none)	0 of 0	yes
glycine biosynthesis IV		0.846	1	1	0	(none)	0 of 0	yes
L-asparagine degradation I		0.846	1	1	1	superpathway of L-aspartate and L-asparagine biosynthesis	0 of 0	yes
L-glutamate biosynthesis I		0.846	1	1	0	(none)	0 of 0	yes
D-serine degradation		0.846	3	2	0	(none)	0 of 0	yes
trehalose degradation VI (periplasmic)		0.846	2	2	0	(none)	0 of 0	yes
L-glutamine degradation II		0.846	1	1	0	(none)	0 of 0	yes
L-asparagine biosynthesis II		0.846	1	1	0	(none)	0 of 0	yes
glutathione-glutaredoxin redox reactions		0.846	2	1	0	(none)	0 of 0	yes
fatty acid beta-oxidation III (unsaturated, odd number)		0.846	1	1	0	(none)	0 of 0	yes
citrate degradation		0.846	2	2	0	(none)	0 of 0	yes
superoxide radicals degradation		0.846	2	2	2	reactive oxygen species degradation	0 of 0	yes
acyl carrier protein activation		0.846	1	1	0	(none)	0 of 0	yes
NAD de novo biosynthesis I (from aspartate)		0.85	6	6	0	(none)	1 of 1	yes
NAD phosphorylation and dephosphorylation		0.855	3	3	0	(none)	1 of 1	yes
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)		0.863	8	8	0	(none)	2 of 2	yes
glucose and glucose-1-phosphate degradation		0.877	5	5	0	(none)	0 of 0	yes
anhydromuropeptides recycling I		0.893	12	12	0	(none)	1 of 1	yes
2-oxoglutarate decarboxylation to succinyl-CoA		0.895	3	3	0	(none)	1 of 1	yes
L-homoserine biosynthesis		0.895	3	3	0	(none)	0 of 0	yes
adenine and adenosine salvage III		0.92	4	4	0	(none)	2 of 2	yes
acetoacetate degradation (to acetyl CoA)		0.923	2	2	0	(none)	1 of 1	yes
cis-vaccenate biosynthesis		0.924	5	4	0	(none)	0 of 1	yes
trehalose degradation II (cytosolic)		0.925	2	2	0	(none)	1 of 1	yes
NAD salvage pathway I (PNC VI cycle)		0.927	6	5	0	(none)	0 of 0	yes
CDP-diacylglycerol biosynthesis II		0.934	4	4	0	(none)	0 of 0	yes
biotin-carboxyl carrier protein assembly		0.943	4	3	0	(none)	0 of 0	yes
L-leucine biosynthesis		0.973	6	5	0	(none)	0 of 0	yes
5-aminoimidazole ribonucleotide biosynthesis II		0.989	5	5	5	superpathway of 5-aminoimidazole ribonucleotide biosynthesis	0 of 0	yes
pentose phosphate pathway (oxidative branch) I		0.99	3	3	2	Entner-Doudoroff pathway I superpathway of glycolysis and the Entner-Doudoroff pathway	0 of 0	yes
UMP biosynthesis II		0.99	6	6	1	L-arginine biosynthesis I (via L-ornithine)	1 of 1	yes
UMP biosynthesis I		0.99	6	6	1	L-arginine biosynthesis I (via L-ornithine)	1 of 1	yes
glycerol degradation I		1.0	2	2	0	(none)	0 of 0	yes
2-aminoethylphosphonate degradation I		1.0	3	3	1	mixed acid fermentation	1 of 1	yes
lipid IVA biosynthesis		1.0	6	6	0	(none)	0 of 0	yes
hydrogen oxidation I (aerobic)		1.0	1	1	0	(none)	0 of 0	yes
guanosine ribonucleotides de novo biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
NAD salvage pathway IV (from nicotinamide riboside)		1.0	2	2	0	(none)	0 of 0	yes
phosphate acquisition		1.0	1	1	0	(none)	0 of 0	yes
trehalose biosynthesis V		1.0	3	3	0	(none)	1 of 1	yes
2-methylcitrate cycle I		1.0	5	5	0	(none)	1 of 1	yes
formate to nitrite electron transfer		1.0	3	3	0	(none)	0 of 0	yes
nitrate reduction VIII (dissimilatory)		1.0	2	2	0	(none)	2 of 2	yes
fatty acid biosynthesis initiation II		1.0	2	2	0	(none)	0 of 0	yes
L-arginine degradation II (AST pathway)		1.0	5	5	0	(none)	0 of 0	yes
pyrimidine ribonucleosides salvage III		1.0	2	2	1	pyrimidine nucleobases salvage II	1 of 1	yes
tRNA processing		1.0	10	10	0	(none)	0 of 0	yes
L-ascorbate degradation II (bacterial, aerobic)		1.0	8	5	0	(none)	0 of 0	yes
thiamine diphosphate biosynthesis I (E. coli)		1.0	2	2	1	thiamine salvage II	0 of 0	yes
adenosylcobinamide-GDP biosynthesis from cobyrinate a,c-diamide		1.0	6	6	1	superpathway of adenosylcobalamin salvage from cobinamide I	1 of 1	yes
cyclopropane fatty acid (CFA) biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
galactitol degradation		1.0	5	3	0	(none)	1 of 1	yes
siroheme biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
guanine and guanosine salvage III		1.0	1	1	0	(none)	0 of 0	yes
guanosine deoxyribonucleotides de novo biosynthesis II		1.0	4	4	0	(none)	2 of 2	yes
bis(guanylyl molybdenum cofactor) biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
pyruvate fermentation to acetate II		1.0	3	3	3	mixed acid fermentation pyruvate fermentation to acetate IV superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass	1 of 1	yes
D-fructuronate degradation		1.0	4	4	0	(none)	0 of 0	yes
pyrimidine ribonucleosides salvage II		1.0	2	2	0	(none)	1 of 1	yes
pyridoxal 5'-phosphate biosynthesis I		1.0	7	7	0	(none)	0 of 0	yes
adenosine deoxyribonucleotides de novo biosynthesis II		1.0	4	4	0	(none)	2 of 2	yes
2-methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP		1.0	3	3	0	(none)	0 of 0	yes
L-ornithine biosynthesis I		1.0	5	5	0	(none)	1 of 1	yes
acyl-CoA hydrolysis		1.0	1	1	0	(none)	0 of 0	yes
nitrate reduction X (dissimilatory, periplasmic)		1.0	3	3	0	(none)	0 of 0	yes
adenosine deoxyribonucleotides de novo biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
lipid A-core biosynthesis (Salmonella)		1.0	10	10	0	(none)	0 of 0	yes
NADH to cytochrome bd oxidase electron transfer I		1.0	2	2	0	(none)	2 of 2	yes
methylglyoxal degradation I		1.0	3	3	0	(none)	1 of 2	yes
octaprenyl diphosphate biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
fructoselysine and glucoselysine degradation		1.0	4	4	0	(none)	0 of 0	yes
biotin biosynthesis from 8-amino-7-oxononanoate I		1.0	3	3	0	(none)	1 of 1	yes
L-idonate degradation		1.0	3	3	0	(none)	0 of 0	yes
L-tryptophan biosynthesis		1.0	6	6	0	(none)	0 of 0	yes
L-threonine degradation I		1.0	6	5	0	(none)	0 of 0	yes
pyrimidine nucleobases salvage I		1.0	1	1	0	(none)	0 of 0	yes
UDP-N-acetyl-alpha-D-mannosaminouronate biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
tRNA charging		1.0	21	21	0	(none)	0 of 0	yes
ubiquinol-8 biosynthesis (prokaryotic)		1.0	8	8	0	(none)	1 of 1	yes
thiamine salvage I		1.0	2	2	1	thiamine salvage II	0 of 0	yes
guanylyl molybdenum cofactor biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
glutathione biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleotides de novo biosynthesis II		1.0	7	7	7	superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli)	2 of 2	yes
salicylate degradation I		1.0	1	1	0	(none)	0 of 0	yes
adenosylcobalamin salvage from cobalamin		1.0	5	4	0	(none)	0 of 0	yes
4-aminobenzoate biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
reductive monocarboxylic acid cycle		1.0	2	2	2	mixed acid fermentation pyruvate fermentation to acetate I pyruvate fermentation to acetate IV	2 of 2	yes
fructose degradation		1.0	1	1	0	(none)	0 of 0	yes
trehalose biosynthesis I		1.0	2	2	0	(none)	1 of 1	yes
L-valine biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
NADH to fumarate electron transfer		1.0	2	2	1	mixed acid fermentation	2 of 2	yes
di-trans,poly-cis-undecaprenyl phosphate biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
CMP-3-deoxy-D-manno-octulosonate biosynthesis		1.0	5	4	0	(none)	1 of 1	yes
L-methionine biosynthesis I		1.0	7	6	1	L-cysteine biosynthesis VI (from L-methionine)	2 of 2	yes
glutathionylspermidine biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
glycine cleavage		1.0	3	3	0	(none)	1 of 1	yes
phosphopantothenate biosynthesis I		1.0	4	4	0	(none)	0 of 0	yes
stearate biosynthesis II (bacteria and plants)		1.0	6	5	0	(none)	0 of 0	yes
L-isoleucine biosynthesis I (from threonine)		1.0	7	6	0	(none)	1 of 1	yes
allantoin degradation to ureidoglycolate II (ammonia producing)		1.0	3	3	0	(none)	0 of 0	yes
polymyxin resistance		1.0	6	6	0	(none)	0 of 0	yes
L-proline degradation		1.0	3	2	0	(none)	1 of 1	yes
D-xylose degradation I		1.0	2	2	0	(none)	0 of 0	yes
N-end rule pathway I (prokaryotic)		1.0	2	2	0	(none)	0 of 0	yes
L-cysteine biosynthesis I		1.0	2	2	0	(none)	0 of 0	yes
3-dehydroquinate biosynthesis I		1.0	2	2	0	(none)	0 of 0	yes
NADH to cytochrome bo oxidase electron transfer I		1.0	2	2	0	(none)	2 of 2	yes
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)		1.0	9	8	0	(none)	2 of 3	yes
2'-deoxy-alpha-D-ribose 1-phosphate degradation		1.0	3	3	1	mixed acid fermentation	0 of 0	yes
hydrogen production V		1.0	2	2	0	(none)	0 of 0	yes
palmitate biosynthesis II (bacteria and plants)		1.0	31	29	0	(none)	1 of 1	yes
L-galactonate degradation		1.0	1	1	0	(none)	0 of 0	yes
beta-alanine biosynthesis III		1.0	1	1	0	(none)	0 of 0	yes
pyrimidine deoxyribonucleosides degradation		1.0	3	3	0	(none)	0 of 0	yes
glycerophosphodiester degradation		1.0	2	2	0	(none)	0 of 0	yes
pyruvate fermentation to acetoin III		1.0	3	3	0	(none)	0 of 0	yes
ppGpp biosynthesis		1.0	6	6	0	(none)	0 of 0	yes
cardiolipin biosynthesis III		1.0	3	3	2	phosphatidylglycerol biosynthesis II (non-plastidic) phosphatidylglycerol biosynthesis I (plastidic)	1 of 1	yes
trehalose degradation I (low osmolarity)		1.0	2	2	0	(none)	1 of 1	yes
L-lysine biosynthesis I		1.0	9	9	0	(none)	1 of 1	yes
salmochelin degradation		1.0	6	6	0	(none)	0 of 0	yes
methylsalicylate degradation		1.0	2	2	0	(none)	0 of 0	yes
thiosulfate disproportionation III (quinone)		1.0	1	1	0	(none)	0 of 0	yes
queuosine biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
GDP-L-fucose biosynthesis I (from GDP-D-mannose)		1.0	3	3	0	(none)	2 of 2	yes
chitobiose degradation		1.0	2	2	0	(none)	0 of 0	yes
dTDP-N-acetylthomosamine biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
L-arabinose degradation I		1.0	3	3	0	(none)	0 of 0	yes
molybdenum cofactor biosynthesis		1.0	8	7	0	(none)	0 of 0	yes
L-alanine biosynthesis I		1.0	3	3	0	(none)	0 of 0	yes
thiosulfate disproportionation IV (rhodanese)		1.0	1	1	0	(none)	0 of 0	yes
inosine-5'-phosphate biosynthesis I		1.0	6	6	0	(none)	3 of 3	yes
L-selenocysteine biosynthesis I (bacteria)		1.0	3	3	0	(none)	1 of 1	yes
lipoate biosynthesis and incorporation I		1.0	2	2	0	(none)	0 of 0	yes
CDP-abequose biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I		1.0	3	3	3	superpathway of adenosylcobalamin salvage from cobinamide I	1 of 1	yes
spermidine biosynthesis I		1.0	2	2	0	(none)	0 of 0	yes
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
2,3-dihydroxybenzoate biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
L-asparagine biosynthesis I		1.0	1	1	0	(none)	0 of 0	yes
NAD salvage pathway III (to nicotinamide riboside)		1.0	3	3	0	(none)	2 of 2	yes
paraoxon degradation		1.0	1	1	0	(none)	0 of 0	yes
fatty acid biosynthesis initiation I		1.0	3	3	0	(none)	1 of 1	yes
NADH repair		1.0	4	2	0	(none)	1 of 1	NO
L-cysteine biosynthesis VII (from S-sulfo-L-cysteine)		1.0	4	3	0	(none)	1 of 1	yes
NADH to dimethyl sulfoxide electron transfer		1.0	2	2	0	(none)	2 of 2	yes
(Kdo)2-lipid A biosynthesis I		1.0	2	2	2	superpathway of (Kdo)2-lipid A biosynthesis	0 of 0	yes
L-lactaldehyde degradation (anaerobic)		1.0	1	1	0	(none)	0 of 0	yes
Entner-Doudoroff shunt		1.0	2	2	0	(none)	0 of 0	yes
NADH to trimethylamine N-oxide electron transfer		1.0	2	2	0	(none)	2 of 2	yes
melibiose degradation		1.0	1	1	0	(none)	0 of 0	yes
fucose degradation		1.0	4	4	0	(none)	1 of 1	yes
muropeptide degradation		1.0	4	4	0	(none)	0 of 0	yes
adenine and adenosine salvage II		1.0	2	2	0	(none)	0 of 0	yes
xanthine and xanthosine salvage		1.0	2	2	0	(none)	0 of 0	yes
adenosylcobinamide-GDP salvage from cobinamide I		1.0	5	4	2	superpathway of adenosylcobalamin salvage from cobinamide I	0 of 0	yes
5-aminoimidazole ribonucleotide biosynthesis I		1.0	5	5	4	superpathway of 5-aminoimidazole ribonucleotide biosynthesis	0 of 0	yes
L-serine biosynthesis I		1.0	3	3	0	(none)	0 of 0	yes
D-threonate degradation		1.0	3	3	0	(none)	0 of 0	yes
ethanolamine utilization		1.0	5	5	4	mixed acid fermentation pyruvate fermentation to acetate IV	1 of 1	yes
N6-L-threonylcarbamoyladenosine37-modified tRNA biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
demethylmenaquinol-8 biosynthesis I		1.0	1	1	0	(none)	0 of 0	yes
tetrahydrofolate biosynthesis		1.0	3	3	0	(none)	1 of 1	yes
tetrathionate reduction I (to thiosulfate)		1.0	1	1	0	(none)	0 of 0	yes
adenosine nucleotides degradation III		1.0	1	1	0	(none)	0 of 0	yes
(S)-propane-1,2-diol degradation		1.0	5	5	0	(none)	1 of 1	yes
4-hydroxyphenylacetate degradation		1.0	8	8	0	(none)	1 of 1	yes
pyruvate decarboxylation to acetyl CoA		1.0	3	3	0	(none)	1 of 1	yes
5-(carboxymethoxy)uridine biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
methyl parathion degradation		1.0	1	1	0	(none)	0 of 0	yes
CMP phosphorylation		1.0	2	2	0	(none)	0 of 0	yes
glycogen biosynthesis I (from ADP-D-Glucose)		1.0	4	4	0	(none)	1 of 1	yes
tetrapyrrole biosynthesis I (from glutamate)		1.0	6	6	0	(none)	0 of 0	yes
8-amino-7-oxononanoate biosynthesis I		1.0	11	11	0	(none)	2 of 2	yes
2-carboxy-1,4-naphthoquinol biosynthesis		1.0	7	6	0	(none)	1 of 1	yes
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion)		1.0	15	14	0	(none)	0 of 0	yes
L-histidine biosynthesis		1.0	10	10	0	(none)	0 of 0	yes
L-threonine biosynthesis		1.0	2	2	0	(none)	0 of 0	yes
L-carnitine degradation I		1.0	4	4	0	(none)	0 of 0	yes
4-aminobutanoate degradation III		1.0	2	2	0	(none)	1 of 1	yes
adenine and adenosine salvage V		1.0	3	3	0	(none)	2 of 2	yes
UTP and CTP de novo biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
cardiolipin biosynthesis I		1.0	3	3	2	phosphatidylglycerol biosynthesis I (plastidic) phosphatidylglycerol biosynthesis II (non-plastidic)	1 of 1	yes
L-ascorbate degradation I (bacterial, anaerobic)		1.0	4	4	0	(none)	1 of 1	yes
nitrate reduction VIIIb (dissimilatory)		1.0	2	2	0	(none)	0 of 0	yes
Salmonella typhimurium LT2 lipopolysaccharide biosynthesis (final steps)		1.0	2	2	0	(none)	0 of 0	yes
nitrate reduction III (dissimilatory)		1.0	2	2	0	(none)	2 of 2	yes
adenosine ribonucleotides de novo biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
ADP-L-glycero-beta-D-manno-heptose biosynthesis		1.0	5	5	0	(none)	1 of 1	yes
preQ0 biosynthesis		1.0	4	4	0	(none)	0 of 0	yes
adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP		1.0	3	3	0	(none)	0 of 0	yes
CDP-diacylglycerol biosynthesis III		1.0	5	5	0	(none)	1 of 1	yes
proline to cytochrome bo oxidase electron transfer		1.0	2	2	0	(none)	0 of 0	yes
L-glutamate degradation II		1.0	2	2	0	(none)	0 of 0	yes
lipoate biosynthesis and incorporation II		1.0	2	2	0	(none)	1 of 1	yes
Kdo transfer to lipid IVA I		1.0	2	2	0	(none)	0 of 0	yes
thiazole biosynthesis I (facultative anaerobic bacteria)		1.0	7	7	0	(none)	0 of 0	yes
salmochelin biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
L-rhamnose degradation I		1.0	5	4	0	(none)	1 of 1	yes
menaquinol-8 biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
PRPP biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
guanosine deoxyribonucleotides de novo biosynthesis I		1.0	2	2	0	(none)	0 of 0	yes
formaldehyde oxidation II (glutathione-dependent)		1.0	3	2	0	(none)	1 of 1	yes
L-threonine degradation II		1.0	2	2	0	(none)	0 of 0	yes
sulfate activation for sulfonation		1.0	2	2	0	(none)	0 of 0	yes
succinate to cytochrome bd oxidase electron transfer		1.0	2	2	0	(none)	2 of 2	yes
acyl carrier protein metabolism		1.0	2	2	0	(none)	0 of 0	yes
D-galactonate degradation		1.0	3	3	0	(none)	0 of 0	yes
formate to dimethyl sulfoxide electron transfer		1.0	2	2	0	(none)	2 of 2	yes
N-acetylneuraminate and N-acetylmannosamine degradation I		1.0	3	3	0	(none)	0 of 0	yes
formate to trimethylamine N-oxide electron transfer		1.0	2	2	0	(none)	2 of 2	yes
pyrimidine ribonucleosides degradation		1.0	2	2	0	(none)	1 of 1	yes
aminopropanol phosphate biosynthesis I		1.0	2	2	0	(none)	1 of 1	yes
D-galacturonate degradation I		1.0	5	5	0	(none)	0 of 0	yes
phosphatidylethanolamine biosynthesis I		1.0	2	2	0	(none)	0 of 0	yes
ribose phosphorylation		1.0	2	2	0	(none)	1 of 1	yes
cellulose biosynthesis		1.0	1	1	0	(none)	0 of 0	yes
chorismate biosynthesis from 3-dehydroquinate		1.0	6	6	0	(none)	0 of 0	yes
CDP-4-dehydro-3,6-dideoxy-D-glucose biosynthesis		1.0	3	3	0	(none)	0 of 0	yes
purine deoxyribonucleosides degradation I		1.0	4	4	0	(none)	0 of 0	yes
succinate to cytochrome bo oxidase electron transfer		1.0	2	2	0	(none)	2 of 2	yes

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