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discounted EARLY registration ends Dec 31, 2014
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MetaCyc Pathway: toluene degradation III (aerobic) (via p-cresol)

Enzyme View:

This view shows enzymes only for those organisms listed below, in the list of taxa known to possess the pathway. If an enzyme name is shown in bold, there is experimental evidence for this enzymatic activity.

Superclasses: Degradation/Utilization/Assimilation Aromatic Compounds Degradation Toluenes Degradation
Superpathways

Some taxa known to possess this pathway include ? : Pseudomonas mendocina , Pseudomonas mendocina (pWWO) or (pTOL)

Expected Taxonomic Range: Proteobacteria

Summary:
Several microorganisms have been isolated which are capable of degrading toluene via various mechanisms. Pseudomonas mendocina KR1 is capable of using toluene as a sole carbon and energy source, converting toluene to protocatechuate which is then oxidized to form substrates of the tricarboxylic acid cycle. Unlike the other pathways of microbial toluene degradation which involves meta cleavage of the aromatic ring, the enzymes in this degradation pathway degrade toluene by a sequence of ortho ring cleavage reactions. [Whited91] The initial step in this reaction involves the hydroxylation of toluene by a toluene-4-monooxygenase system to form p-cresol.[Yen91] p-cresol is subsequently converted to p-hydroxybenzaldehyde by a flavocytochrome, p-cresol methylhydroxylase.[McIntire86] p-hydroxybenzaldehyde is then oxidized by an NAD+-dependent dehydrogenase to form p-hydroxybenzoate.[Bossert89] Hydroxybenzoate is then subsequently hydroxylated to form protocatechuate, which is then completely dissimilated by an ortho cleavage pathway. [Whited91]

Superpathways: superpathway of aerobic toluene degradation

Subpathways: toluene degradation to protocatechuate (via p-cresol) , protocatechuate degradation II (ortho-cleavage pathway) , 3-oxoadipate degradation

Variants: toluene degradation I (aerobic) (via o-cresol) , toluene degradation II (aerobic) (via 4-methylcatechol) , toluene degradation IV (aerobic) (via catechol) , toluene degradation to 2-oxopent-4-enoate (via 4-methylcatechol) , toluene degradation to 2-oxopent-4-enoate (via toluene-cis-diol) , toluene degradation to 2-oxopent-4-enoate I (via o-cresol) , toluene degradation to benzoate , toluene degradation to benzoyl-CoA (anaerobic) , toluene degradation V (aerobic) (via toluene-cis-diol) , toluene degradation VI (anaerobic)

Credits:
Created 12-May-2006 by Caspi R , SRI International


References

Bossert89: Bossert ID, Whited G, Gibson DT, Young LY (1989). "Anaerobic oxidation of p-cresol mediated by a partially purified methylhydroxylase from a denitrifying bacterium." J Bacteriol 1989;171(6);2956-62. PMID: 2722739

Johnson06: Johnson DR, Park J, Kukor JJ, Abriola LM (2006). "Effect of carbon starvation on toluene degradation activity by toluene monooxygenase-expressing bacteria." Biodegradation NIL;1-9. PMID: 16477358

McIntire86: McIntire W, Singer TP, Smith AJ, Mathews FS (1986). "Amino acid and sequence analysis of the cytochrome and flavoprotein subunits of p-cresol methylhydroxylase." Biochemistry 1986;25(20);5975-81. PMID: 3790500

Whited91: Whited GM, Gibson DT (1991). "Separation and partial characterization of the enzymes of the toluene-4-monooxygenase catabolic pathway in Pseudomonas mendocina KR1." J Bacteriol 173(9);3017-20. PMID: 2019564

Yen91: Yen KM, Karl MR, Blatt LM, Simon MJ, Winter RB, Fausset PR, Lu HS, Harcourt AA, Chen KK (1991). "Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase." J Bacteriol 1991;173(17);5315-27. PMID: 1885512

Other References Related to Enzymes, Genes, Subpathways, and Substrates of this Pathway

Brunet03: Brunet P, Dou L, Cerini C, Berland Y (2003). "Protein-bound uremic retention solutes." Adv Ren Replace Ther 10(4);310-20. PMID: 14681860

Bull81: Bull C, Ballou DP (1981). "Purification and properties of protocatechuate 3,4-dioxygenase from Pseudomonas putida. A new iron to subunit stoichiometry." J Biol Chem 256(24);12673-80. PMID: 6273403

Canovas67: Canovas JL, Ornston LN, Stanier RY (1967). "Evolutionary significance of metabolic control systems. The beta-ketoadipate pathway provides a case history in bacteria." Science 156(783);1695-9. PMID: 5611030

Cerini04: Cerini C, Dou L, Anfosso F, Sabatier F, Moal V, Glorieux G, De Smet R, Vanholder R, Dignat-George F, Sampol J, Berland Y, Brunet P (2004). "P-cresol, a uremic retention solute, alters the endothelial barrier function in vitro." Thromb Haemost 92(1);140-50. PMID: 15213855

Chan79: Chan WY, Seale TW, Shukla JB, Rennert OM (1979). "Polyamine conjugates and total polyamine concentrations in human amniotic fluid." Clin Chim Acta 91(3);233-41. PMID: 761399

Ferrandez98: Ferrandez A, Minambres B, Garcia B, Olivera ER, Luengo JM, Garcia JL, Diaz E (1998). "Catabolism of phenylacetic acid in Escherichia coli. Characterization of a new aerobic hybrid pathway." J Biol Chem 1998;273(40);25974-86. PMID: 9748275

Frazee93: Frazee RW, Livingston DM, LaPorte DC, Lipscomb JD (1993). "Cloning, sequencing, and expression of the Pseudomonas putida protocatechuate 3,4-dioxygenase genes." J Bacteriol 175(19);6194-202. PMID: 8407791

Gunsalus53: Gunsalus CF, Stanier RY, Gunsalus IC (1953). "The enzymatic conversion of mandelic acid to benzoic acid. III. Fractionation and properties of the soluble enzymes." J Bacteriol 66(5);548-53. PMID: 13108854

Gunter53: Gunter SE (1953). "The enzymatic oxidation of p-hydroxymandelic acid to p-hydroxybenzoic acid." J Bacteriol 66(3);341-6. PMID: 13096484

Halak06: Halak S, Basta T, Burger S, Contzen M, Stolz A (2006). "Characterization of the genes encoding the 3-carboxy-cis,cis-muconate-lactonizing enzymes from the 4-sulfocatechol degradative pathways of Hydrogenophaga intermedia S1 and Agrobacterium radiobacter S2." Microbiology 152(Pt 11);3207-16. PMID: 17074892

Hammer96: Hammer A, Stolz A, Knackmuss H (1996). "Purification and characterization of a novel type of protocatechuate 3,4-dioxygenase with the ability to oxidize 4-sulfocatechol." Arch Microbiol 166(2);92-100. PMID: 8772173

Harwood94: Harwood CS, Nichols NN, Kim MK, Ditty JL, Parales RE (1994). "Identification of the pcaRKF gene cluster from Pseudomonas putida: involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate." J Bacteriol 176(21);6479-88. PMID: 7961399

Harwood96: Harwood CS, Parales RE (1996). "The beta-ketoadipate pathway and the biology of self-identity." Annu Rev Microbiol 50;553-90. PMID: 8905091

Hegeman66: Hegeman GD (1966). "Synthesis of the enzymes of the mandelate pathway by Pseudomonas putida. I. Synthesis of enzymes by the wild type." J Bacteriol 91(3);1140-54. PMID: 5929747

Hemmi01: Hemmi H, Studts JM, Chae YK, Song J, Markley JL, Fox BG (2001). "Solution structure of the toluene 4-monooxygenase effector protein (T4moD)." Biochemistry 40(12);3512-24. PMID: 11297417

Hosokawa66: Hosokawa K, Stanier RY (1966). "Crystallization and properties of p-hydroxybenzoate hydroxylase from Pseudomonas putida." J Biol Chem 241(10);2453-60. PMID: 4380381

Husain78: Husain M, Schopfer LM, Massey V (1978). "P-Hydroxybenzoate hydroxylase and melilotate hydroxylase." Methods Enzymol 53;543-58. PMID: 30879

Ismail03: Ismail W, El-Said Mohamed M, Wanner BL, Datsenko KA, Eisenreich W, Rohdich F, Bacher A, Fuchs G (2003). "Functional genomics by NMR spectroscopy. Phenylacetate catabolism in Escherichia coli." Eur J Biochem 270(14);3047-54. PMID: 12846838

Kaschabek02: Kaschabek SR, Kuhn B, Muller D, Schmidt E, Reineke W (2002). "Degradation of aromatics and chloroaromatics by Pseudomonas sp. strain B13: purification and characterization of 3-oxoadipate:succinyl-coenzyme A (CoA) transferase and 3-oxoadipyl-CoA thiolase." J Bacteriol 184(1);207-15. PMID: 11741862

Latendresse13: Latendresse M. (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc."

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Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 21, 2014, BIOCYC14A.