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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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MetaCyc Pathway: acyl-CoA hydrolysis

Enzyme View:

This view shows enzymes only for those organisms listed below, in the list of taxa known to possess the pathway. If an enzyme name is shown in bold, there is experimental evidence for this enzymatic activity.

Synonyms: acyl-CoA thioesterase pathway

Superclasses: Biosynthesis Fatty Acids and Lipids Biosynthesis

Some taxa known to possess this pathway include ? : Arabidopsis thaliana col , Escherichia coli K-12 substr. MG1655

Expected Taxonomic Range: Archaea , Bacteria , Eukaryota

Summary:
Fatty acids are often found in the cell in the activated form of an acyl-coA (see fatty acid activation). Acyl-CoAs are used in the biosynthesis of many cellular products and components. In plants they are involved in the biosynthesis of membrane lipids, seed storage lipids, wax, a cutin and suberin.

Acyl-CoA thioesterase hydrolyzes fatty acyl-CoAs to free fatty acids. In eukaryotes, the enzyme activity has been detected in the cytosol, ER, mitochondrion and peroxisome. In prokaryotes, the enzymes activity is localized in the periplasm and cytosol. The physiological roles of acyl-CoA thioesterase remain unclear. Works in animal and yeast shed some preliminary clue about the involvement of the enzyme in fatty acid oxidation. ACH2 is the first cloned plant acyl-CoA thioesterase [Tilton04]. The gene is highly expressed in mature tissues rather than in germinating seedlings where fatty acid beta-oxidation predominantly occurs. It indicates the role of ACH2 is not linked to fatty acid oxidation.

Unification Links: AraCyc:PWY-5148


References

Tilton04: Tilton GB, Shockey JM, Browse J (2004). "Biochemical and molecular characterization of ACH2, an acyl-CoA thioesterase from Arabidopsis thaliana." J Biol Chem 279(9);7487-94. PMID: 14660652

Other References Related to Enzymes, Genes, Subpathways, and Substrates of this Pathway

Barnes68: Barnes EM, Wakil SJ (1968). "Studies on the mechanism of fatty acid synthesis. XIX. Preparation and general properties of palmityl thioesterase." J Biol Chem 1968;243(11);2955-62. PMID: 4871199

Bonner72: Bonner WM, Bloch K (1972). "Purification and properties of fatty acyl thioesterase I from Escherichia coli." J Biol Chem 1972;247(10);3123-33. PMID: 4554913

Cho94: Cho H, Cronan JE (1994). ""Protease I" of Escherichia coli functions as a thioesterase in vivo." J Bacteriol 176(6);1793-5. PMID: 8132479

Cho95: Cho H, Cronan JE (1995). "Defective export of a periplasmic enzyme disrupts regulation of fatty acid synthesis." J Biol Chem 270(9);4216-9. PMID: 7876180

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

GOA01: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

GOA01a: GOA, MGI (2001). "Gene Ontology annotation based on Enzyme Commission mapping." Genomics 74;121-128.

Han13: Han MJ, Kim JY, Kim JA (2013). "Comparison of the large-scale periplasmic proteomes of the Escherichia coli K-12 and B strains." J Biosci Bioeng. PMID: 24140104

Ichihara93: Ichihara S, Matsubara Y, Kato C, Akasaka K, Mizushima S (1993). "Molecular cloning, sequencing, and mapping of the gene encoding protease I and characterization of proteinase and proteinase-defective Escherichia coli mutants." J Bacteriol 175(4);1032-7. PMID: 8432696

Ishihama08: Ishihama Y, Schmidt T, Rappsilber J, Mann M, Hartl FU, Kerner MJ, Frishman D (2008). "Protein abundance profiling of the Escherichia coli cytosol." BMC Genomics 9;102. PMID: 18304323

Jiang94: Jiang P, Cronan JE (1994). "Inhibition of fatty acid synthesis in Escherichia coli in the absence of phospholipid synthesis and release of inhibition by thioesterase action." J Bacteriol 176(10);2814-21. PMID: 7910602

Karasawa91: Karasawa K, Kudo I, Kobayashi T, Homma H, Chiba N, Mizushima H, Inoue K, Nojima S (1991). "Lysophospholipase L1 from Escherichia coli K-12 overproducer." J Biochem (Tokyo) 109(2);288-93. PMID: 1864840

Karasawa99: Karasawa K, Yokoyama K, Setaka M, Nojima S (1999). "The Escherichia coli pldC gene encoding lysophospholipase L(1) is identical to the apeA and tesA genes encoding protease I and thioesterase I, respectively." J Biochem (Tokyo) 1999;126(2);445-8. PMID: 10423542

Kuznetsova05: Kuznetsova E, Proudfoot M, Sanders SA, Reinking J, Savchenko A, Arrowsmith CH, Edwards AM, Yakunin AF (2005). "Enzyme genomics: Application of general enzymatic screens to discover new enzymes." FEMS Microbiol Rev 29(2);263-79. PMID: 15808744

Latendresse13: Latendresse M. (2013). "Computing Gibbs Free Energy of Compounds and Reactions in MetaCyc."

Lee06a: Lee LC, Lee YL, Leu RJ, Shaw JF (2006). "Functional role of catalytic triad and oxyanion hole-forming residues on enzyme activity of Escherichia coli thioesterase I/protease I/phospholipase L1." Biochem J 397(1);69-76. PMID: 16515533

Lee07b: Lee LC, Liaw YC, Lee YL, Shaw JF (2007). "Enhanced preference for pi-bond containing substrates is correlated to Pro110 in the substrate-binding tunnel of Escherichia coli thioesterase I/protease I/lysophospholipase L(1)." Biochim Biophys Acta 1774(8);959-67. PMID: 17604237

Lee09a: Lee LC, Chou YL, Chen HH, Lee YL, Shaw JF (2009). "Functional role of a non-active site residue Trp(23) on the enzyme activity of Escherichia coli thioesterase I/protease I/lysophospholipase L(1)." Biochim Biophys Acta 1794(10);1467-73. PMID: 19540368

Lee97b: Lee YL, Chen JC, Shaw JF (1997). "The thioesterase I of Escherichia coli has arylesterase activity and shows stereospecificity for protease substrates." Biochem Biophys Res Commun 231(2);452-6. PMID: 9070299

Li00a: Li J, Derewenda U, Dauter Z, Smith S, Derewenda ZS (2000). "Crystal structure of the Escherichia coli thioesterase II, a homolog of the human Nef binding enzyme." Nat Struct Biol 7(7);555-9. PMID: 10876240

Showing only 20 references. To show more, press the button "Show all references".


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, biocyc14.