Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
Pathway Tools
Intro Tutorial
discounted registration ends Sept 5, 2015
twitter

MetaCyc Taxon: Neopterygii

Synonyms: Neopterygi

Rank: subclass

Taxonomic lineage: cellular organisms , Eukaryota , Opisthokonta , Metazoa , Eumetazoa , Bilateria , Deuterostomia , Chordata , Craniata , Vertebrata , Gnathostomata , Teleostomi , Euteleostomi , Actinopterygii , Actinopteri

Direct sub-taxa of Neopterygii: Holostei, Teleostei

Unification Links: NCBI-Taxonomy:41665


Pathways present in Neopterygii or one of its sub-taxa (8).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
CMP-2-keto-3-deoxy-D-glycero-D-galacto-nononate biosynthesis ,
fatty acid β-oxidation VI (peroxisome) ,
melatonin degradation II ,
spermine biosynthesis ,
superpathway of melatonin degradation ,
superpathway of sialic acids and CMP-sialic acids biosynthesis ,
ubiquinol-9 biosynthesis (eukaryotic) ,
urate degradation to allantoin I

Additional pathways which may be present in Neopterygii and all its sub-taxa (422)
These pathways were inferred using their expected taxonomic range:
(1,4)-β-xylan degradation ,
1D-myo-inositol hexakisphosphate biosynthesis II (mammalian) ,
2-amino-3-carboxymuconate semialdehyde degradation to glutaryl-CoA ,
2-aminoethylphosphonate biosynthesis ,
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-methylbutanoate biosynthesis ,
2-oxobutanoate degradation I ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
3-phosphoinositide biosynthesis ,
3-phosphoinositide degradation ,
4-aminobutanoate degradation I ,
4-hydroxy-2-nonenal detoxification ,
4-hydroxybenzoate biosynthesis I (eukaryotes) ,
4-hydroxyphenylpyruvate biosynthesis ,
5-aminoimidazole ribonucleotide biosynthesis I ,
acetate conversion to acetyl-CoA ,
acetate formation from acetyl-CoA II ,
acetyl-CoA biosynthesis III (from citrate) ,
acyl-ACP thioesterase pathway ,
acyl carrier protein metabolism II (mammalian) ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage I ,
adenine and adenosine salvage II ,
adenine and adenosine salvage III ,
adenine and adenosine salvage VI ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine nucleotides degradation II ,
adenosine ribonucleotides de novo biosynthesis ,
aerobic respiration I (cytochrome c) ,
allantoin degradation to ureidoglycolate II (ammonia producing) ,
allantoin degradation to ureidoglycolate I (urea producing) ,
all-trans-decaprenyl diphosphate biosynthesis ,
all-trans-farnesol biosynthesis ,
all trans undecaprenyl diphosphate biosynthesis ,
α-tocopherol degradation ,
anandamide degradation ,
androgen biosynthesis ,
anthranilate degradation IV (aerobic) ,
arachidonate biosynthesis III (metazoa) ,
arachidonate biosynthesis IV (8-detaturase) ,
ascorbate recycling (cytosolic) ,
beta-carboline biosynthesis ,
bile acid biosynthesis, neutral pathway ,
bisabolene biosynthesis ,
cardiolipin biosynthesis II ,
carotenoid cleavage ,
catecholamine biosynthesis ,
CDP-diacylglycerol biosynthesis I ,
cellulose biosynthesis ,
ceramide degradation ,
ceramide de novo biosynthesis ,
chitin degradation II ,
chitin degradation to ethanol ,
chlorogenic acid degradation ,
cholesterol biosynthesis I ,
cholesterol biosynthesis III (via desmosterol) ,
cholesterol biosynthesis II (via 24,25-dihydrolanosterol) ,
choline degradation I ,
chondroitin biosynthesis ,
chondroitin sulfate biosynthesis ,
chondroitin sulfate biosynthesis (late stages) ,
chondroitin sulfate degradation (metazoa) ,
chrysophanol biosynthesis ,
cis-calamenene related sesquiterpenoids biosynthesis ,
CMP-N-acetylneuraminate biosynthesis I (eukaryotes) ,
CMP-N-glycoloylneuraminate biosynthesis ,
CMP phosphorylation ,
coenzyme A biosynthesis I ,
costunolide biosynthesis ,
creatine biosynthesis ,
creatine-phosphate biosynthesis ,
dammara-20,24-diene biosynthesis ,
dermatan sulfate biosynthesis ,
dermatan sulfate biosynthesis (late stages) ,
dermatan sulfate degradation (metazoa) ,
D-glucuronate degradation I ,
diacylglycerol and triacylglycerol biosynthesis ,
diacylglyceryl-N,N,N-trimethylhomoserine biosynthesis ,
dimethylsulfoniopropanoate degradation I (cleavage) ,
dimethyl sulfoxide degradation ,
diphthamide biosynthesis (eukaryotes) ,
D-mannose degradation ,
D-myo-inositol (1,3,4)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5,6)-tetrakisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis ,
D-myo-inositol (1,4,5)-trisphosphate degradation ,
D-myo-inositol (3,4,5,6)-tetrakisphosphate biosynthesis ,
D-myo-inositol-5-phosphate metabolism ,
docosahexaenoate biosynthesis III (mammals) ,
docosahexaenoate biosynthesis I (lower eukaryotes) ,
dolichol and dolichyl phosphate biosynthesis ,
dopamine degradation ,
D-serine degradation ,
D-serine metabolism ,
ent -kaurene biosynthesis II ,
Entner-Doudoroff pathway I ,
epoxysqualene biosynthesis ,
estradiol biosynthesis II ,
estradiol biosynthesis I (via estrone) ,
ethanol degradation II ,
ethanol degradation IV ,
eumelanin biosynthesis ,
fatty acid α-oxidation II ,
fatty acid α-oxidation III ,
fatty acid β-oxidation I ,
fatty acid β-oxidation III (unsaturated, odd number) ,
fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent) ,
fatty acid biosynthesis initiation I ,
fatty acid biosynthesis initiation II ,
flavin biosynthesis IV (mammalian) ,
folate polyglutamylation ,
folate transformations I ,
formaldehyde oxidation II (glutathione-dependent) ,
GABA shunt ,
γ-glutamyl cycle ,
γ-linolenate biosynthesis II (animals) ,
GDP-glucose biosynthesis ,
GDP-L-fucose biosynthesis I (from GDP-D-mannose) ,
GDP-L-fucose biosynthesis II (from L-fucose) ,
GDP-mannose biosynthesis ,
geodin biosynthesis ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
glucocorticoid biosynthesis ,
gluconeogenesis III ,
glucose and glucose-1-phosphate degradation ,
glutamate removal from folates ,
glutaminyl-tRNAgln biosynthesis via transamidation ,
glutaryl-CoA degradation ,
glutathione biosynthesis ,
glutathione-mediated detoxification I ,
glutathione redox reactions I ,
glutathione redox reactions II ,
glutathionylspermidine biosynthesis ,
glycerol-3-phosphate shuttle ,
glycerol degradation V ,
glycine betaine degradation I ,
glycine biosynthesis I ,
glycine biosynthesis II ,
glycine biosynthesis III ,
glycine cleavage ,
glycoaminoglycan-protein linkage region biosynthesis ,
glycogen biosynthesis II (from UDP-D-Glucose) ,
glycogen degradation I (bacterial) ,
glycogen degradation II (eukaryotic) ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glycolysis VI (metazoan) ,
glyoxylate cycle ,
guanine and guanosine salvage II ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
guanosine nucleotides degradation III ,
heme biosynthesis I (aerobic) ,
heme degradation ,
heparan sulfate biosynthesis ,
heparan sulfate biosynthesis (late stages) ,
heptaprenyl diphosphate biosynthesis ,
hexaprenyl diphosphate biosynthesis ,
histamine biosynthesis ,
histamine degradation ,
homolactic fermentation ,
homospermidine biosynthesis ,
hypusine biosynthesis ,
icosapentaenoate biosynthesis III (fungi) ,
icosapentaenoate biosynthesis II (metazoa) ,
icosapentaenoate biosynthesis V (Δ8 desaturase) ,
inosine-5'-phosphate biosynthesis II ,
inositol pyrophosphates biosynthesis ,
isoprene biosynthesis II (engineered) ,
itaconate degradation ,
juniperonate biosynthesis ,
ketogenesis ,
ketolysis ,
L-alanine biosynthesis II ,
L-alanine biosynthesis III ,
L-alanine degradation III ,
laminaribiose degradation ,
lanosterol biosynthesis ,
L-arginine degradation I (arginase pathway) ,
L-arginine degradation V (arginine deiminase pathway) ,
L-arginine degradation X (arginine monooxygenase pathway) ,
L-ascorbate biosynthesis IV ,
L-asparagine biosynthesis I ,
L-asparagine biosynthesis II ,
L-asparagine degradation I ,
L-aspartate biosynthesis ,
L-aspartate degradation I ,
L-aspartate degradation II ,
L-carnitine biosynthesis ,
L-citrulline degradation ,
L-citrulline-nitric oxide cycle ,
L-cysteine biosynthesis III (from L-homocysteine) ,
L-cysteine degradation II ,
L-dopachrome biosynthesis ,
L-dopa degradation ,
leukotriene biosynthesis ,
L-glutamate and L-glutamine biosynthesis ,
L-glutamate biosynthesis II ,
L-glutamate biosynthesis III ,
L-glutamate degradation I ,
L-glutamate degradation IX (via 4-aminobutanoate) ,
L-glutamate degradation X ,
L-glutamine biosynthesis I ,
L-glutamine degradation I ,
L-histidine degradation V ,
linalool biosynthesis I ,
linalool biosynthesis II ,
lipoate biosynthesis and incorporation I ,
lipoate salvage I ,
L-isoleucine biosynthesis I (from threonine) ,
L-isoleucine degradation I ,
L-leucine degradation I ,
L-lysine degradation XI (mammalian) ,
L-methionine degradation I (to L-homocysteine) ,
L-methionine salvage cycle III ,
L-Nδ-acetylornithine biosynthesis ,
long-chain fatty acid activation ,
L-ornithine de novo biosynthesis ,
L-phenylalanine degradation IV (mammalian, via side chain) ,
L-proline biosynthesis I ,
L-proline biosynthesis II (from arginine) ,
L-proline degradation ,
L-selenocysteine biosynthesis II (archaea and eukaryotes) ,
L-serine biosynthesis ,
L-serine degradation ,
L-threonine degradation II ,
L-tryptophan degradation III (eukaryotic) ,
L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde ,
L-tyrosine biosynthesis IV ,
L-valine biosynthesis ,
L-valine degradation I ,
mannosyl-glycoprotein N-acetylglucosaminyltransferases ,
melatonin degradation I ,
melatonin degradation III ,
melibiose degradation ,
methylglyoxal degradation I ,
methylglyoxal degradation II ,
methylglyoxal degradation III ,
methylglyoxal degradation VII ,
methylhalides biosynthesis (plants) ,
methyl ketone biosynthesis ,
mevalonate pathway I ,
mitochondrial L-carnitine shuttle ,
molybdenum cofactor biosynthesis ,
monoacylglycerol metabolism (yeast) ,
mRNA capping I ,
mRNA capping II ,
mucin core 1 and core 2 O-glycosylation ,
mucin core 3 and core 4 O-glycosylation ,
myo-inositol biosynthesis ,
N10-formyl-tetrahydrofolate biosynthesis ,
N-acetylglucosamine degradation I ,
N-acetylglucosamine degradation II ,
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde ,
NAD biosynthesis I (from aspartate) ,
NAD biosynthesis II (from tryptophan) ,
NADH repair ,
NADH to cytochrome bd oxidase electron transfer I ,
NAD phosphorylation and dephosphorylation I ,
NAD salvage pathway III ,
neurosporaxanthin biosynthesis ,
nonaprenyl diphosphate biosynthesis I ,
noradrenaline and adrenaline degradation ,
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) ,
octaprenyl diphosphate biosynthesis ,
oleate biosynthesis II (animals and fungi) ,
oxidative ethanol degradation III ,
oxidized GTP and dGTP detoxification ,
palmitate biosynthesis I (animals and fungi) ,
palmitoleate biosynthesis II (plants and bacteria) ,
pentose phosphate pathway ,
pentose phosphate pathway (non-oxidative branch) ,
pentose phosphate pathway (oxidative branch) ,
phenylethanol biosynthesis ,
phenylethylamine degradation I ,
phosphate acquisition ,
phosphatidylcholine biosynthesis I ,
phosphatidylcholine biosynthesis V ,
phosphatidylcholine resynthesis via glycerophosphocholine ,
phosphatidylethanolamine biosynthesis II ,
phosphatidylethanolamine biosynthesis III ,
phosphatidylglycerol biosynthesis II (non-plastidic) ,
phosphatidylglycerol biosynthesis I (plastidic) ,
phosphatidylinositol biosynthesis II (eukaryotes) ,
phospholipases ,
phospholipid remodeling (phosphatidate, yeast) ,
phospholipid remodeling (phosphatidylcholine, yeast) ,
phospholipid remodeling (phosphatidylethanolamine, yeast) ,
plumbagin biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
polyvinyl alcohol degradation ,
pregnenolone biosynthesis ,
progesterone biosynthesis ,
propanoyl CoA degradation I ,
propanoyl-CoA degradation II ,
protein citrullination ,
protein N-glycosylation (eukaryotic, high mannose) ,
protein O-[N-acetyl]-glucosylation ,
protein ubiquitylation ,
PRPP biosynthesis I ,
pseudouridine degradation ,
purine deoxyribonucleosides salvage ,
purine nucleotides degradation II (aerobic) ,
purine ribonucleosides degradation ,
putrescine biosynthesis I ,
putrescine biosynthesis III ,
pyridoxal 5'-phosphate salvage I ,
pyrimidine deoxyribonucleosides degradation ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides biosynthesis from CTP ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine ribonucleosides degradation ,
pyrimidine ribonucleosides salvage I ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate V ,
pyruvate fermentation to acetate VII ,
pyruvate fermentation to butanol II ,
pyruvate fermentation to hexanol ,
pyruvate fermentation to isobutanol (engineered) ,
pyruvate fermentation to lactate ,
raspberry ketone biosynthesis ,
reactive oxygen species degradation ,
resveratrol degradation ,
retinoate biosynthesis I ,
retinoate biosynthesis II ,
retinol biosynthesis ,
ricinine degradation ,
S-adenosyl-L-methionine cycle II ,
sciadonate biosynthesis ,
sedoheptulose bisphosphate bypass ,
selinene biosynthesis ,
serotonin and melatonin biosynthesis ,
serotonin degradation ,
S-methyl-5'-thioadenosine degradation II ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
spermidine biosynthesis I ,
spermine and spermidine degradation I ,
sphingolipid biosynthesis (mammals) ,
sphingomyelin metabolism ,
sphingosine and sphingosine-1-phosphate metabolism ,
stearate biosynthesis I (animals and fungi) ,
sterol:steryl ester interconversion (yeast) ,
sulfate activation for sulfonation ,
sulfite oxidation IV ,
superoxide radicals degradation ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of Allium flavor precursors ,
superpathway of branched amino acid biosynthesis ,
superpathway of cholesterol biosynthesis ,
superpathway of dimethylsulfoniopropanoate degradation ,
superpathway of D-myo-inositol (1,4,5)-trisphosphate metabolism ,
superpathway of fatty acid biosynthesis initiation (E. coli) ,
superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) ,
superpathway of glycolysis and Entner-Doudoroff ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of heme biosynthesis from glycine ,
superpathway of inositol phosphate compounds ,
superpathway of L-asparagine biosynthesis ,
superpathway of L-citrulline metabolism ,
superpathway of L-cysteine biosynthesis (mammalian) ,
superpathway of L-lysine degradation ,
superpathway of L-serine and glycine biosynthesis I ,
superpathway of NAD biosynthesis in eukaryotes ,
superpathway of phosphatidate biosynthesis (yeast) ,
superpathway of polyamine biosynthesis II ,
superpathway of purine nucleotide salvage ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine ribonucleosides degradation ,
superpathway of pyrimidine ribonucleotides de novo biosynthesis ,
taxadiene biosynthesis (engineered) ,
TCA cycle III (animals) ,
terminal O-glycans residues modification ,
terminal olefins biosynthesis I ,
terminal olefins biosynthesis II ,
tetrahydrobiopterin biosynthesis I ,
tetrahydrobiopterin biosynthesis II ,
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate ,
tetrapyrrole biosynthesis II (from glycine) ,
the visual cycle I (vertebrates) ,
thiamin triphosphate metabolism ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
thiosulfate disproportionation III (rhodanese) ,
thyroid hormone biosynthesis ,
thyroid hormone metabolism II (via conjugation and/or degradation) ,
thyroid hormone metabolism I (via deiodination) ,
thyronamine and iodothyronamine metabolism ,
trans-4-hydroxy-L-proline degradation I ,
trans, trans-farnesyl diphosphate biosynthesis ,
triacylglycerol degradation ,
tRNA charging ,
tRNA methylation (yeast) ,
tRNA splicing ,
ubiquinol-10 biosynthesis (eukaryotic) ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-galactose biosynthesis ,
UDP-D-xylose biosynthesis ,
UDP-glucose biosynthesis ,
UDP-N-acetyl-D-galactosamine biosynthesis I ,
UDP-N-acetyl-D-glucosamine biosynthesis I ,
UDP-N-acetyl-D-glucosamine biosynthesis II ,
UMP biosynthesis ,
urate biosynthesis/inosine 5'-phosphate degradation ,
urea cycle ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
UTP and CTP dephosphorylation II ,
valencene and 7-epi-α-selinene biosynthesis ,
very long chain fatty acid biosynthesis I ,
very long chain fatty acid biosynthesis II ,
vitamin D3 biosynthesis ,
wybutosine biosynthesis ,
xanthine and xanthosine salvage ,
xylitol degradation ,
zymosterol biosynthesis


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 19.0 on Sat Aug 29, 2015, biocyc13.