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MetaCyc Organism: Methanobrevibacter smithii

Synonyms: strain PS, OCM 144, DSM 861, ATCC 35061

Rank: species

Taxonomic lineage: cellular organisms , Archaea , Euryarchaeota , Methanobacteria , Methanobacteriales , Methanobacteriaceae , Methanobrevibacter

Direct sub-taxa of Methanobrevibacter smithii: Methanobrevibacter smithii ATCC 35061, Methanobrevibacter smithii DSM 11975, Methanobrevibacter smithii DSM 2374, Methanobrevibacter smithii DSM 2375, Methanobrevibacter smithii TS145A, Methanobrevibacter smithii TS145B, Methanobrevibacter smithii TS146A, Methanobrevibacter smithii TS146B, Methanobrevibacter smithii TS146C, Methanobrevibacter smithii TS146D, Methanobrevibacter smithii TS146E, Methanobrevibacter smithii TS147A, Methanobrevibacter smithii TS147B, Methanobrevibacter smithii TS147C, Methanobrevibacter smithii TS94A, Methanobrevibacter smithii TS94B, Methanobrevibacter smithii TS94C, Methanobrevibacter smithii TS95A, Methanobrevibacter smithii TS95B, Methanobrevibacter smithii TS95C

Unification Links: NCBI-Taxonomy:2173


Pathways present in Methanobrevibacter smithii or one of its sub-taxa (2).
These pathways were observed experimentally in this taxon or one of its sub-taxa:
L-isoleucine biosynthesis II ,
L-isoleucine biosynthesis V

Additional pathways which may be present in Methanobrevibacter smithii and all its sub-taxa (299)
These pathways were inferred using their expected taxonomic range:
[2Fe-2S] iron-sulfur cluster biosynthesis ,
2-oxobutanoate degradation II ,
2-oxoglutarate decarboxylation to succinyl-CoA ,
2-oxoisovalerate decarboxylation to isobutanoyl-CoA ,
3-dehydroquinate biosynthesis II (archaea) ,
3-phenylpropanoate degradation ,
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis ,
4-aminobenzoate biosynthesis ,
4-hydroxybenzoate biosynthesis II (microbes) ,
4-hydroxyphenylpyruvate biosynthesis ,
5-aminoimidazole ribonucleotide biosynthesis II ,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea) ,
7-(3-amino-3-carboxypropyl)-wyosine biosynthesis ,
acetate conversion to acetyl-CoA ,
acetate formation from acetyl-CoA I ,
acetate formation from acetyl-CoA II ,
acyl-ACP thioesterase pathway ,
acyl carrier protein metabolism I ,
acyl-CoA hydrolysis ,
adenine and adenosine salvage I ,
adenine and adenosine salvage III ,
adenine and adenosine salvage IV ,
adenine and adenosine salvage VI ,
adenosine 5'-phosphoramidate biosynthesis ,
adenosine deoxyribonucleotides de novo biosynthesis ,
adenosine nucleotides degradation II ,
adenosine nucleotides degradation IV ,
adenosine ribonucleotides de novo biosynthesis ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide I ,
adenosylcobalamin biosynthesis from cobyrinate a,c-diamide II ,
adenosylcobalamin biosynthesis I (early cobalt insertion) ,
adenosylcobalamin biosynthesis II (late cobalt incorporation) ,
adenosylcobalamin salvage from cobalamin ,
adenosylcobalamin salvage from cobinamide II ,
ammonia oxidation I (aerobic) ,
archaeosine biosynthesis ,
archaetidylinositol biosynthesis ,
archaetidylserine and archaetidylethanolamine biosynthesis ,
arsenate detoxification II (glutaredoxin) ,
arsenite oxidation II (respiratory) ,
base-degraded thiamin salvage ,
β-alanine biosynthesis III ,
carbon disulfide oxidation I (anaerobic) ,
carbon tetrachloride degradation I ,
carbon tetrachloride degradation II ,
CDP-archaeol biosynthesis ,
chitin degradation I (archaea) ,
chlorogenic acid degradation ,
chorismate biosynthesis from 3-dehydroquinate ,
chorismate biosynthesis II (archaea) ,
cis-calamenene related sesquiterpenoids biosynthesis ,
CMP phosphorylation ,
CO2 fixation into oxaloacetate (anaplerotic) ,
cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion) ,
cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation) ,
coenzyme A biosynthesis I ,
coenzyme B biosynthesis ,
coenzyme B/coenzyme M regeneration ,
coenzyme M biosynthesis I ,
costunolide biosynthesis ,
dammara-20,24-diene biosynthesis ,
demethylmenaquinol-8 biosynthesis II ,
D-galactonate degradation ,
dimethyl sulfoxide degradation ,
di-myo-inositol phosphate biosynthesis ,
diphthamide biosynthesis (archaea) ,
D-malate degradation ,
D-mannose degradation ,
D-serine metabolism ,
dTDP-L-rhamnose biosynthesis I ,
epoxysqualene biosynthesis ,
ethanol degradation I ,
ethanol degradation II ,
factor 420 biosynthesis ,
factor 420 polyglutamylation ,
factor 430 biosynthesis ,
fatty acid β-oxidation III (unsaturated, odd number) ,
flavin biosynthesis II (archaea) ,
folate polyglutamylation ,
folate transformations I ,
fructose degradation ,
GDP-glucose biosynthesis ,
GDP-mannose biosynthesis ,
gentisate degradation I ,
geranyl diphosphate biosynthesis ,
geranylgeranyl diphosphate biosynthesis ,
gluconeogenesis I ,
gluconeogenesis II (Methanobacterium thermoautotrophicum) ,
glucose and glucose-1-phosphate degradation ,
glucosylglycerate biosynthesis I ,
glutaminyl-tRNAgln biosynthesis via transamidation ,
glycerol degradation I ,
glycine betaine biosynthesis IV (from glycine) ,
glycine betaine biosynthesis V (from glycine) ,
glycine betaine degradation I ,
glycine biosynthesis III ,
glycine cleavage ,
glycogen degradation I (bacterial) ,
glycolysis I (from glucose 6-phosphate) ,
glycolysis II (from fructose 6-phosphate) ,
glycolysis V (Pyrococcus) ,
glyoxylate cycle ,
guanine and guanosine salvage III ,
guanosine deoxyribonucleotides de novo biosynthesis I ,
heme biosynthesis III (from siroheme) ,
heptaprenyl diphosphate biosynthesis ,
homolactic fermentation ,
homospermidine biosynthesis ,
hydrogen oxidation III (anaerobic, NADP) ,
hydrogen production II ,
hydrogen production III ,
hydrogen production IV ,
hydrogen production V ,
hydroxymethylpyrimidine salvage ,
icosapentaenoate biosynthesis V (Δ8 desaturase) ,
incomplete reductive TCA cycle ,
inosine-5'-phosphate biosynthesis III ,
isoprene biosynthesis II (engineered) ,
kojibiose degradation ,
lactate biosynthesis (archaea) ,
L-alanine degradation IV ,
laminaribiose degradation ,
L-arabinose degradation IV ,
L-arginine biosynthesis II (acetyl cycle) ,
L-arginine biosynthesis IV (archaebacteria) ,
L-arginine biosynthesis I (via L-ornithine) ,
L-arginine degradation I (arginase pathway) ,
L-arginine degradation V (arginine deiminase pathway) ,
L-asparagine biosynthesis III (tRNA-dependent) ,
L-asparagine degradation I ,
L-aspartate biosynthesis ,
L-aspartate degradation I ,
L-citrulline degradation ,
L-cysteine biosynthesis I ,
L-cysteine biosynthesis III (from L-homocysteine) ,
L-cysteine biosynthesis II (tRNA-dependent) ,
L-glutamate and L-glutamine biosynthesis ,
L-glutamate biosynthesis I ,
L-glutamate biosynthesis II ,
L-glutamate biosynthesis III ,
L-glutamate degradation I ,
L-glutamate degradation X ,
L-glutamine biosynthesis I ,
L-glutamine degradation II ,
L-histidine biosynthesis ,
lipoate salvage I ,
L-isoleucine biosynthesis IV ,
L-isoleucine degradation I ,
L-lactaldehyde degradation (aerobic) ,
L-leucine biosynthesis ,
L-lysine biosynthesis V ,
L-lysine biosynthesis VI ,
L-methionine degradation I (to L-homocysteine) ,
L-methionine salvage cycle I (bacteria and plants) ,
L-methionine salvage cycle III ,
long-chain fatty acid activation ,
L-ornithine biosynthesis ,
L-phenylalanine biosynthesis I ,
L-proline degradation ,
L-selenocysteine biosynthesis II (archaea and eukaryotes) ,
L-serine biosynthesis ,
L-threonine biosynthesis ,
L-threonine degradation II ,
L-tryptophan biosynthesis ,
L-tyrosine biosynthesis I ,
L-valine biosynthesis ,
mannosylglycerate biosynthesis I ,
melibiose degradation ,
menaquinol-7 biosynthesis ,
menaquinol-8 biosynthesis ,
Methanobacterium thermoautotrophicum biosynthetic metabolism ,
methanofuran biosynthesis ,
methanogenesis from acetate ,
methanogenesis from dimethylamine ,
methanogenesis from dimethylsulfide ,
methanogenesis from H2 and CO2 ,
methanogenesis from methanethiol ,
methanogenesis from methanol ,
methanogenesis from methylamine ,
methanogenesis from methylthiopropanoate ,
methanogenesis from tetramethylammonium ,
methanogenesis from trimethylamine ,
methyl-coenzyme M oxidation to CO2 ,
methyl-coenzyme M reduction to methane ,
methylhalides biosynthesis (plants) ,
methylwyosine biosynthesis ,
mevalonate pathway I ,
mevalonate pathway II (archaea) ,
mevalonate pathway III (archaea) ,
molybdenum cofactor biosynthesis ,
myo-inositol biosynthesis ,
NADH repair ,
nitrate reduction I (denitrification) ,
nitrogen fixation I (ferredoxin) ,
nitrogen fixation II (flavodoxin) ,
nonaprenyl diphosphate biosynthesis I ,
octaprenyl diphosphate biosynthesis ,
phenylethanol biosynthesis ,
phospholipases ,
phosphopantothenate biosynthesis III ,
plumbagin biosynthesis ,
polyhydroxybutanoate biosynthesis ,
polyhydroxydecanoate biosynthesis ,
polyisoprenoid biosynthesis (E. coli) ,
proline to cytochrome bo oxidase electron transfer ,
propanoyl CoA degradation I ,
protein N-glycosylation (Haloferax volcanii) ,
protein N-glycosylation (Methanococcus voltae) ,
PRPP biosynthesis I ,
purine deoxyribonucleosides degradation I ,
purine deoxyribonucleosides salvage ,
purine nucleotides degradation II (aerobic) ,
purine ribonucleosides degradation ,
pyridoxal 5'-phosphate biosynthesis II ,
pyrimidine deoxyribonucleosides degradation ,
pyrimidine deoxyribonucleosides salvage ,
pyrimidine deoxyribonucleotide phosphorylation ,
pyrimidine deoxyribonucleotides de novo biosynthesis I ,
pyrimidine deoxyribonucleotides de novo biosynthesis II ,
pyrimidine deoxyribonucleotides de novo biosynthesis III ,
pyrimidine deoxyribonucleotides de novo biosynthesis IV ,
pyrimidine deoxyribonucleotides dephosphorylation ,
pyrimidine nucleobases salvage I ,
pyrimidine nucleobases salvage II ,
pyrimidine ribonucleosides degradation ,
pyrimidine ribonucleosides salvage I ,
pyrimidine ribonucleosides salvage II ,
pyrimidine ribonucleosides salvage III ,
pyruvate decarboxylation to acetyl CoA ,
pyruvate fermentation to acetate and alanine ,
pyruvate fermentation to acetate III ,
pyruvate fermentation to isobutanol (engineered) ,
reactive oxygen species degradation ,
reductive acetyl coenzyme A pathway ,
reductive TCA cycle I ,
ribose degradation ,
S-adenosyl-L-methionine biosynthesis ,
S-adenosyl-L-methionine cycle I ,
sciadonate biosynthesis ,
selinene biosynthesis ,
S-methyl-5'-thioadenosine degradation I ,
S-methyl-5-thio-α-D-ribose 1-phosphate degradation ,
spermidine biosynthesis I ,
spermidine biosynthesis III ,
spermine biosynthesis ,
starch degradation III ,
starch degradation IV ,
starch degradation V ,
sulfate reduction IV (dissimilatory) ,
sulfur reduction I ,
sulfur reduction II (via polysulfide) ,
superpathay of heme biosynthesis from glutamate ,
superpathway of acetate utilization and formation ,
superpathway of adenosine nucleotides de novo biosynthesis I ,
superpathway of adenosine nucleotides de novo biosynthesis II ,
superpathway of Allium flavor precursors ,
superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis ,
superpathway of glyoxylate bypass and TCA ,
superpathway of guanosine nucleotides de novo biosynthesis I ,
superpathway of hydrogen production ,
superpathway of L-cysteine biosynthesis (mammalian) ,
superpathway of L-serine and glycine biosynthesis I ,
superpathway of L-threonine biosynthesis ,
superpathway of menaquinol-7 biosynthesis ,
superpathway of methanogenesis ,
superpathway of pentose and pentitol degradation ,
superpathway of purine nucleotides de novo biosynthesis I ,
superpathway of pyrimidine deoxyribonucleoside salvage ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis ,
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) ,
superpathway of pyrimidine nucleobases salvage ,
superpathway of pyrimidine ribonucleosides degradation ,
superpathway of pyrimidine ribonucleosides salvage ,
taxadiene biosynthesis (engineered) ,
TCA cycle I (prokaryotic) ,
tetrahydromethanopterin biosynthesis ,
tetrapyrrole biosynthesis I (from glutamate) ,
tetrathionate oxidation ,
thio-molybdenum cofactor biosynthesis ,
thioredoxin pathway ,
trans-lycopene biosynthesis I (bacteria) ,
trans, trans-farnesyl diphosphate biosynthesis ,
trehalose biosynthesis V ,
trehalose biosynthesis VI ,
triacylglycerol degradation ,
tRNA charging ,
tRNA splicing ,
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) ,
UDP-D-galactose biosynthesis ,
UDP-glucose biosynthesis ,
UDP-N-acetyl-D-glucosamine biosynthesis I ,
UMP biosynthesis ,
uracil degradation I (reductive) ,
UTP and CTP de novo biosynthesis ,
UTP and CTP dephosphorylation I ,
valencene and 7-epi-α-selinene biosynthesis ,
xanthine and xanthosine salvage ,
xylose degradation III ,
xylose degradation IV


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 19.0 on Sun Aug 30, 2015, biocyc11.