Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Compound: (6-4) photoproduct (in DNA)

Superclasses: a nucleic acid component a nucleotide a dinucleotide a dinucleotide (nucleic acid)
a nucleic acid component an oligonucleotide a dinucleotide a dinucleotide (nucleic acid)

Citations: [Schleicher07]

SMILES: C([R1])C1(C2(OP(=O)(O)OCC5(C(OP(=O)(O)O[R2])CC(N4(C(=O)N=C(C3(C(O)([R])C(=O)NC(=O)N(C(O1)C2)3))C([R3])=C4))O5)))

Reactions known to consume the compound:

Not in pathways:
an oligonucleotide + H2O → n a nucleoside 5'-monophosphate
an oligonucleotide + H2O → an oligonucleotide + a nucleoside 5'-monophosphate


a nucleotide + H2O → a nucleoside + phosphate

Reactions known to produce the compound:

Not in pathways:
a poly (U) tail + H2O → n an oligonucleotide
a poly(A) tail + H2O → n an oligonucleotide
5S rRNA precursor + 2 H2O → a mature 5S-rRNA + 2 an oligonucleotide

In Reactions of unknown directionality:

Not in pathways:
(6-4) photoproduct (in DNA) = a DNA pair of adjacent pyrimidines


a dinucleotide (nucleic acid) + H2O = 2 a nucleoside 5'-monophosphate + 2 H+
a single stranded DNA = n a dinucleotide (nucleic acid) + n a trinucleotide


a nucleotide + a 2'-deoxynucleoside = a nucleoside + a 2'-deoxyribonucleoside 5'-monophosphate

Credits:
Created 07-Aug-2009 by Caspi R , SRI International


References

Schleicher07: Schleicher E, Hitomi K, Kay CW, Getzoff ED, Todo T, Weber S (2007). "Electron nuclear double resonance differentiates complementary roles for active site histidines in (6-4) photolyase." J Biol Chem 282(7);4738-47. PMID: 17164245


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Tue Nov 25, 2014, BIOCYC13B.