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MetaCyc Gene-Ontology-Terms Class: GO:0042597 - periplasmic space

Synonyms: GO:0005620, periplasm

Definition: The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Parent Classes:
GO:0044464 - cell part

Part Of:
GO:0005623 - cell

Child Classes:
GO:0030288 - outer membrane-bounded periplasmic space (229)

Parts:
GO:0031237 - intrinsic component of periplasmic side of plasma membrane (6)

Term Members:
endochitinase (chiA),
N-acetylmuramyl-L-alanine amidase C (amiC),
periplasmic chaperone (skp),
TolB - periplasmic protein of the Tol-Pal system,
N-acetylmuramoyl-L-alanine amidase A (amiA),
EnvC divisome associated factor, activator of peptidoglycan hydrolases,
N-acetylmuramoyl-L-alanine amidase B (amiB),
conserved periplasmic protein (efeO),
periplasmic trehalase (treA),
formate dehydrogenase N, α subunit (fdnG),
formate dehydrogenase-O, α subunit (fdoG),
outer membrane lipoprotein - activator of MrcA activity (lpoA),
L,D-transpeptidase ErfK (ldtA),
L,D-transpeptidase YbiS (ldtB),
L,D-transpeptidase YcfS (ldtC),
SpeA,
heme-containing peroxidase/deferrochelatase (efeB),
asparaginase II (ansB),
GlpQ,
molybdopterin synthase sulfurtransferase (ynjE),
superoxide dismutase (Cu-Zn) (sodC),
trimethylamine N-oxide reductase, TorZ subunit,
trimethylamine N-oxide reductase, catalytic subunit (torA),
hydrogenase 2, small subunit (hybO),
hydrogenase 2 - [Fe-S] binding, ferredoxin-type component HybA,
thiosulfate sulfurtransferase (pspE),
glucose-1-phosphatase (agp),
β-D-glucoside glucohydrolase, periplasmic (bglX),
α-amylase (malS),
L,D-transpeptidase LdtE,
RNase I, cleaves phosphodiester bond between any two nucleotides,
TesA,
serine endoprotease, periplasmic monomer (degQ),
DNA-specific endonuclease I (endA),
phosphoglycerol transferase II (opgB),
aldehyde dehydrogenase,
aldehyde dehydrogenase: molybdenum cofactor-binding subunit (paoC),
aldehyde dehydrogenase, FAD-binding subunit (paoB),
aldehyde dehydrogenase, Fe-S subunit (paoA),
large subunit of periplasmic nitrate reductase, molybdoprotein (napA),
subunit of periplasmic nitrate reductase, cytochrome c550 protein (napB),
protein disulfide oxidoreductase - DsbAreduced,
lipid hydroperoxide peroxidase (tpx),
thioredoxin/glutathione peroxidase (btuE),
formate dependent nitrite reductase - NrfA subunit,
formate-dependent nitrite reductase - penta-heme cytochrome c (nrfB),
γ-glutamyltranspeptidase (ggt),
soluble lytic murein transglycosylase (slt),
arylsulfatase (aslA),
TynA,
DsbC monomer,
DsbGreduced,
N-acetylneuraminate mutarotase (nanM),
β-lactamase; penicillin resistance (ampC),
protease III (ptrA),
UDP-sugar hydrolase / 5'-ribonucleotidase / 5'-deoxyribonucleotidase (ushA),
AppA,
multicopper oxidase with role in copper homeostasis (cueO),
meso-diaminopimelic acid-D-alanyl endopeptidase / D-alanyl-D-alanine carboxypeptidase (dacB),
penicillin-binding protein 7 (pbpG),
MepA,
AphA monomer,
2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase (cpdB),
peptidyl-prolyl cis-trans isomerase A (rotamase A) (ppiA),
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (fklB),
peptidyl-prolyl cis-trans isomerase (PPIase) (surA),
PhoA,
xylose ABC transporter - periplasmic binding protein (xylF),
taurine ABC transporter - periplasmic binding protein (tauA),
dipeptide ABC transporter - periplasmic binding protein (dppA),
glutamate / aspartate ABC transporter - periplasmic binding protein (gltI),
arabinose ABC transporter - periplasmic binding protein (araF),
glutathione ABC transporter - periplasmic binding protein (gsiB),
phosphate ABC transporter - periplasmic binding protein (pstS),
D-allose ABC transporter - periplasmic binding protein (alsB),
glutamine ABC transporter - periplasmic binding protein (glnH),
Zn2+ ABC transporter - periplasmic binding protein (znuA),
glycine betaine ABC transporter - periplasmic binding protein (osmF),
leucine ABC transporter - periplasmic binding protein (livK),
branched chain amino acid ABC transporter - periplasmic binding protein (livJ),
molybdate ABC transporter - periplasmic binding protein (modA),
L-arginine ABC transporter - periplasmic binding protein (artJ),
Autoinducer-2 ABC transporter - periplasmic binding protein (lsrB),
glycine betaine / proline ABC transporter - periplasmic binding protein (proX),
phosphonate ABC transporter - periplasmic binding protein (phnD),
maltose ABC transporter - periplasmic binding protein (malE),
aliphatic sulfonate ABC transporter - periplasmic binding protein (ssuA),
glycerol-3-phosphate ABC transporter - periplasmic binding protein (ugpB),
L-cystine ABC transporter - periplasmic binding protein (tcyJ),
galactose ABC transporter - periplasmic binding protein (mglB),
murein tripeptide ABC transporter OppBCDFMppA - periplasmic binding protein,
nickel ABC transporter - periplasmic binding protein (nikA),
sulfate / thiosulfate ABC transporter - periplasmic binding protein Sbp,
sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP,
putrescine ABC transporter - periplasmic binding protein (potF),
putrescine / spermidine ABC transporter - periplasmic binding protein (potD),
galactofuranose / galactopyranose ABC transporter - periplasmic binding protein (ytfQ),
ribose ABC transporter - putative periplasmic binding protein (rbsB),
copper / silver efflux system - periplasmic binding protein and metallochaperone (cusF),
2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein (yiaO),
vitamin B12 ABC transporter - periplasmic binding protein (btuF),
ferric dicitrate ABC transporter - periplasmic binding protein (fecB),
ferric enterobactin ABC transporter - periplasmic binding protein (fepB),
TonB energy transducing system,
iron (III) hydroxamate ABC transporter - periplasmic binding protein (fhuD),
LptA,
heme d1 dehydrogenase (nirF),
thiosulfate oxidoreductase subunit,
sulfur:ferric ion oxidoreductase subunit,
periplasmic β-N-acetylglucosaminidase (exoI),
nitrous oxide reductase subunit (nosZ),
NirS

Unification Links: GO:0042597


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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by Pathway Tools version 19.5 (software by SRI International) on Mon May 2, 2016, biocyc11.