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discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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MetaCyc Gene-Ontology-Terms Class: GO:0042597 - periplasmic space

Synonyms: GO:0005620, periplasm

Definition: The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Parent Classes:
GO:0044464 - cell part

Part Of:
GO:0005623 - cell

Child Classes:
GO:0030288 - outer membrane-bounded periplasmic space (220)

Parts:
GO:0031237 - intrinsic component of periplasmic side of plasma membrane (1)

Term Members:
aldehyde dehydrogenase ,
aldehyde dehydrogenase, Fe-S subunit (yagT) ,
aldehyde dehydrogenase: molybdenum cofactor-binding subunit (yagR) ,
endochitinase (chiA) ,
aldehyde dehydrogenase, FAD-binding subunit (yagS) ,
periplasmic trehalase (treA) ,
GlpQ ,
molybdopterin synthase sulfurtransferase (ynjE) ,
SpeA ,
AnsB ,
thiosulfate sulfurtransferase (pspE) ,
formate dehydrogenase N, α subunit (fdnG) ,
formate dehydrogenase-O, α subunit (fdoG) ,
trimethylamine N-oxide reductase III, TorZ subunit ,
trimethylamine N-oxide reductase, catalytic subunit (torA) ,
superoxide dismutase (Cu-Zn) (sodC) ,
serine endoprotease, periplasmic (degQ) ,
protease III (ptrA) ,
UDP-sugar hydrolase / 5'-ribonucleotidase / 5'-deoxyribonucleotidase (ushA) ,
meso-diaminopimelic acid-D-alanyl endopeptidase / D-alanyl-D-alanine carboxypeptidase (dacB) ,
penicillin-binding protein 7 (pbpG) ,
soluble lytic murein transglycosylase (slt) ,
N-acetylneuraminate mutarotase (nanM) ,
MepA ,
β-D-glucoside glucohydrolase, periplasmic (bglX) ,
phosphoglycerol transferase II (opgB) ,
TesA ,
TynA ,
hydrogenase 2, small subunit (hybO) ,
hydrogenase 2 4Fe-4S ferredoxin-type component (hybA) ,
arylsulfatase (aslA) ,
large subunit of periplasmic nitrate reductase, molybdoprotein (napA) ,
subunit of periplasmic nitrate reductase, cytochrome c550 protein (napB) ,
protein disulfide oxidoreductase - DsbAreduced ,
DsbC monomer ,
DsbGreduced ,
N-acetylmuramyl-L-alanine amidase (amiC) ,
N-acetylmuramoyl-L-alanine amidase 2 (amiB) ,
N-acetylmuramoyl-L-alanine amidase 1 (amiA) ,
formate dependent nitrite reductase - NrfA subunit ,
formate-dependent nitrite reductase - penta-heme cytochrome c (nrfB) ,
α-amylase (malS) ,
DNA-specific endonuclease I (endA) ,
lipid hydroperoxide peroxidase (tpx) ,
multicopper oxidase with role in copper homeostasis (cueO) ,
γ-glutamyltranspeptidase (ggt) ,
RNase I, cleaves phosphodiester bond between any two nucleotides ,
thioredoxin/glutathione peroxidase (btuE) ,
AphA monomer ,
β-lactamase; penicillin resistance (ampC) ,
Agp ,
L,D-transpeptidase YnhG ,
AppA ,
peptidyl-prolyl cis-trans isomerase A (rotamase A) (ppiA) ,
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (fklB) ,
peptidyl-prolyl cis-trans isomerase (PPIase) (surA) ,
2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase (cpdB) ,
PhoA ,
LptA ,
glutamine ABC transporter - periplasmic binding protein (glnH) ,
leucine ABC transporter - periplasmic binding protein (livK) ,
murein tripeptide ABC transporter OppBCDFMppA - periplasmic binding protein ,
molybdate ABC transporter - periplasmic binding protein (modA) ,
L-arginine ABC transporter - periplasmic binding protein (artJ) ,
aliphatic sulfonate ABC transporter - periplasmic binding protein (ssuA) ,
phosphonate ABC transporter - periplasmic binding protein (phnD) ,
glycine betaine / proline ABC transporter - periplasmic binding protein (proX) ,
glycerol-3-phosphate ABC transporter - periplasmic binding protein (ugpB) ,
nickel ABC transporter - periplasmic binding protein (nikA) ,
galactofuranose / galactopyranose ABC transporter - periplasmic binding protein (ytfQ) ,
putrescine ABC transporter - periplasmic binding protein (potF) ,
taurine ABC transporter - periplasmic binding protein (tauA) ,
ribose ABC transporter - putative periplasmic binding protein (rbsB) ,
dipeptide ABC transporter - periplasmic binding protein (dppA) ,
galactose ABC transporter - periplasmic binding protein (mglB) ,
glutamate / aspartate ABC transporter - periplasmic binding protein (gltI) ,
xylose ABC transporter - periplasmic binding protein (xylF) ,
branched chain amino acid ABC transporter - periplasmic binding protein (livJ) ,
glutathione ABC transporter - periplasmic binding protein (gsiB) ,
Autoinducer-2 ABC transporter - periplasmic binding protein (lsrB) ,
arabinose ABC transporter - periplasmic binding protein (araF) ,
D-allose ABC transporter - periplasmic binding protein (alsB) ,
sulfate / thiosulfate ABC transporter - periplasmic binding protein Sbp ,
sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP ,
putrescine / spermidine ABC transporter - periplasmic binding protein (potD) ,
Zn2+ ABC transporter - periplasmic binding protein (znuA) ,
maltose ABC transporter - periplasmic binding protein (malE) ,
phosphate ABC transporter - periplasmic binding protein (pstS) ,
2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein (yiaO) ,
copper / silver efflux system - periplasmic binding protein and metallochaperone (cusF) ,
vitamin B12 ABC transporter - periplasmic binding protein (btuF) ,
ferric dicitrate ABC transporter - periplasmic binding protein (fecB) ,
ferric enterobactin ABC transporter - periplasmic binding protein (fepB) ,
TonB energy transducing system ,
iron (III) hydroxamate ABC transporter - periplasmic binding protein (fhuD) ,
heme d1 dehydrogenase (nirF) ,
periplasmic chaperone (skp) ,
TolB ,
thiosulfate oxidoreductase subunit ,
sulfur:ferric ion oxidoreductase subunit ,
periplasmic β-N-acetylglucosaminidase (exoI) ,
nitrous oxide reductase subunit (nosZ) ,
NirS

Unification Links: GO:0042597


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Fri Nov 28, 2014, BIOCYC13B.