Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
twitter

MetaCyc Gene-Ontology-Terms Class: GO:0042597 - periplasmic space

Synonyms: GO:0005620, periplasm

Definition: The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Parent Classes:
GO:0044464 - cell part

Part Of:
GO:0005623 - cell

Child Classes:
GO:0030288 - outer membrane-bounded periplasmic space (220)

Parts:
GO:0031237 - intrinsic component of periplasmic side of plasma membrane (1)

Term Members:
aldehyde dehydrogenase ,
aldehyde dehydrogenase, Fe-S subunit (yagT) ,
aldehyde dehydrogenase: molybdenum cofactor-binding subunit (yagR) ,
endochitinase (chiA) ,
aldehyde dehydrogenase, FAD-binding subunit (yagS) ,
periplasmic trehalase (treA) ,
GlpQ ,
molybdopterin synthase sulfurtransferase (ynjE) ,
SpeA ,
AnsB ,
thiosulfate sulfurtransferase (pspE) ,
formate dehydrogenase N, α subunit (fdnG) ,
formate dehydrogenase-O, α subunit (fdoG) ,
trimethylamine N-oxide reductase III, TorZ subunit ,
trimethylamine N-oxide reductase, catalytic subunit (torA) ,
superoxide dismutase (Cu-Zn) (sodC) ,
serine endoprotease, periplasmic (degQ) ,
protease III (ptrA) ,
UDP-sugar hydrolase / 5'-ribonucleotidase / 5'-deoxyribonucleotidase (ushA) ,
meso-diaminopimelic acid-D-alanyl endopeptidase / D-alanyl-D-alanine carboxypeptidase (dacB) ,
penicillin-binding protein 7 (pbpG) ,
soluble lytic murein transglycosylase (slt) ,
N-acetylneuraminate mutarotase (nanM) ,
MepA ,
β-D-glucoside glucohydrolase, periplasmic (bglX) ,
phosphoglycerol transferase II (opgB) ,
TesA ,
TynA ,
hydrogenase 2, small subunit (hybO) ,
hydrogenase 2 4Fe-4S ferredoxin-type component (hybA) ,
arylsulfatase (aslA) ,
large subunit of periplasmic nitrate reductase, molybdoprotein (napA) ,
subunit of periplasmic nitrate reductase, cytochrome c550 protein (napB) ,
protein disulfide oxidoreductase - DsbAreduced ,
DsbC monomer ,
DsbGreduced ,
N-acetylmuramyl-L-alanine amidase (amiC) ,
N-acetylmuramoyl-L-alanine amidase 2 (amiB) ,
N-acetylmuramoyl-L-alanine amidase 1 (amiA) ,
formate dependent nitrite reductase - NrfA subunit ,
formate-dependent nitrite reductase - penta-heme cytochrome c (nrfB) ,
α-amylase (malS) ,
DNA-specific endonuclease I (endA) ,
lipid hydroperoxide peroxidase (tpx) ,
multicopper oxidase with role in copper homeostasis (cueO) ,
γ-glutamyltranspeptidase (ggt) ,
RNase I, cleaves phosphodiester bond between any two nucleotides ,
thioredoxin/glutathione peroxidase (btuE) ,
AphA monomer ,
β-lactamase; penicillin resistance (ampC) ,
Agp ,
L,D-transpeptidase YnhG ,
AppA ,
peptidyl-prolyl cis-trans isomerase A (rotamase A) (ppiA) ,
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (fklB) ,
peptidyl-prolyl cis-trans isomerase (PPIase) (surA) ,
2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase (cpdB) ,
PhoA ,
LptA ,
glutamine ABC transporter - periplasmic binding protein (glnH) ,
leucine ABC transporter - periplasmic binding protein (livK) ,
murein tripeptide ABC transporter OppBCDFMppA - periplasmic binding protein ,
molybdate ABC transporter - periplasmic binding protein (modA) ,
L-arginine ABC transporter - periplasmic binding protein (artJ) ,
aliphatic sulfonate ABC transporter - periplasmic binding protein (ssuA) ,
phosphonate ABC transporter - periplasmic binding protein (phnD) ,
glycine betaine / proline ABC transporter - periplasmic binding protein (proX) ,
glycerol-3-phosphate ABC transporter - periplasmic binding protein (ugpB) ,
nickel ABC transporter - periplasmic binding protein (nikA) ,
galactofuranose / galactopyranose ABC transporter - periplasmic binding protein (ytfQ) ,
putrescine ABC transporter - periplasmic binding protein (potF) ,
taurine ABC transporter - periplasmic binding protein (tauA) ,
ribose ABC transporter - putative periplasmic binding protein (rbsB) ,
dipeptide ABC transporter - periplasmic binding protein (dppA) ,
galactose ABC transporter - periplasmic binding protein (mglB) ,
glutamate / aspartate ABC transporter - periplasmic binding protein (gltI) ,
xylose ABC transporter - periplasmic binding protein (xylF) ,
branched chain amino acid ABC transporter - periplasmic binding protein (livJ) ,
glutathione ABC transporter - periplasmic binding protein (gsiB) ,
Autoinducer-2 ABC transporter - periplasmic binding protein (lsrB) ,
arabinose ABC transporter - periplasmic binding protein (araF) ,
D-allose ABC transporter - periplasmic binding protein (alsB) ,
sulfate / thiosulfate ABC transporter - periplasmic binding protein Sbp ,
sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP ,
putrescine / spermidine ABC transporter - periplasmic binding protein (potD) ,
Zn2+ ABC transporter - periplasmic binding protein (znuA) ,
maltose ABC transporter - periplasmic binding protein (malE) ,
phosphate ABC transporter - periplasmic binding protein (pstS) ,
2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein (yiaO) ,
copper / silver efflux system - periplasmic binding protein and metallochaperone (cusF) ,
vitamin B12 ABC transporter - periplasmic binding protein (btuF) ,
ferric dicitrate ABC transporter - periplasmic binding protein (fecB) ,
ferric enterobactin ABC transporter - periplasmic binding protein (fepB) ,
TonB energy transducing system ,
iron (III) hydroxamate ABC transporter - periplasmic binding protein (fhuD) ,
heme d1 dehydrogenase (nirF) ,
periplasmic chaperone (skp) ,
TolB ,
thiosulfate oxidoreductase subunit ,
sulfur:ferric ion oxidoreductase subunit ,
periplasmic β-N-acetylglucosaminidase (exoI) ,
nitrous oxide reductase subunit (nosZ) ,
NirS

Unification Links: GO:0042597


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, biocyc13.