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MetaCyc Gene-Ontology-Terms Class: GO:0003723 - RNA binding

Definition: Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Parent Classes:
GO:0003676 - nucleic acid binding

Child Classes:
GO:0000049 - tRNA binding (27) ,
GO:0000498 - base pairing with RNA (2) ,
GO:0003725 - double-stranded RNA binding (2) ,
GO:0008135 - translation factor activity, RNA binding (3) ,
GO:0019843 - rRNA binding (45) ,
GO:0034336 - misfolded RNA binding (1) ,
GO:0044822 - poly(A) RNA binding (14)

Term Members:
50S ribosomal subunit protein L16 (rplP) ,
50S ribosomal subunit protein L11 (rplK) ,
30S ribosomal subunit protein S5 (rpsE) ,
50S ribosomal subunit protein L22 (rplV) ,
50S ribosomal subunit protein L1 (rplA) ,
30S ribosomal subunit protein S18 (rpsR) ,
50S ribosomal subunit protein L18 (rplR) ,
50S ribosomal subunit protein L21 (rplU) ,
30S ribosomal subunit protein S15 (rpsO) ,
50S ribosomal subunit protein L14 (rplN) ,
30S ribosomal subunit protein S12 (rpsL) ,
50S ribosomal subunit protein L31 (rpmE) ,
50S ribosomal subunit protein L10 (rplJ) ,
30S ribosomal subunit protein S9 (rpsI) ,
50S ribosomal subunit protein L5 (rplE) ,
30S ribosomal subunit protein S6 (rpsF) ,
50S ribosomal subunit protein L23 (rplW) ,
50S ribosomal subunit protein L2 (rplB) ,
30S ribosomal subunit protein S19 (rpsS) ,
30S ribosomal subunit protein S3 (rpsC) ,
50S ribosomal subunit protein L19 (rplS) ,
50S ribosomal subunit protein L27 (rpmA) ,
50S ribosomal subunit protein L15 (rplO) ,
30S ribosomal subunit protein S13 (rpsM) ,
30S ribosomal subunit protein S10 (rpsJ) ,
50S ribosomal subunit protein L29 (rpmC) ,
50S ribosomal subunit protein L6 (rplF) ,
MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity (chpA) ,
30S ribosomal subunit protein S7 (rpsG) ,
50S ribosomal subunit protein L24 (rplX) ,
50S ribosomal subunit protein L3 (rplC) ,
30S ribosomal subunit protein S20 (rpsT) ,
30S ribosomal subunit protein S4 (rpsD) ,
50S ribosomal subunit protein L20 (rplT) ,
30S ribosomal subunit protein S17 (rpsQ) ,
30S ribosomal subunit protein S1 (rpsA) ,
50S ribosomal subunit protein L33 (rpmG) ,
30S ribosomal subunit protein S11 (rpsK) ,
50S ribosomal subunit protein L9 (rplI) ,
30S ribosomal subunit protein S8 (rpsH) ,
50S ribosomal subunit protein L25 (rplY) ,
50S ribosomal subunit protein L4 (rplD) ,
RhlB ,
acetyl-CoA carboxyltransferase, β subunit (accD) ,
thymidylate synthase (thyA) ,
aconitate hydratase 1 (acnA) ,
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase (acnB) ,
alanyl-tRNA synthetase (alaS) ,
tyrosyl-tRNA synthetase (tyrS) ,
threonyl-tRNA synthetase (thrS) ,
phenylalanyl-tRNA synthetase β-chain (pheT) ,
methionyl-tRNA synthetase (metG) ,
RNase P protein component; processes tRNA, 4.5S RNA (rnpA) ,
16S rRNA m62A1518,m62A1519 dimethyltransferase (rsmA) ,
fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase (cca) ,
RNase R (rnr) ,
ProB ,
23S rRNA 2'-O-ribose G2251 methyltransferase monomer (rlmB) ,
tRNA pseudouridine synthase I (truA) ,
ChpB toxin of the ChpB-ChpS toxin-antitoxin system ,
ATP-dependent RNA helicase, specific for 23S rRNA (dbpA) ,
23S rRNA pseudouridine 2604 synthase (rluF) ,
tRNAMet cytidine acetyltransferase (tmcA) ,
23S rRNA pseudouridine synthase (rluC) ,
CRISPR-associated complex for antiviral defense ,
crRNA endonuclease (casE) ,
Cascade subunit D (casD) ,
Cascade subunit C ,
Cascade subunit B (casB) ,
Cascade subunit A (casA) ,
tRNA pseudouridine 13 synthase (truD) ,
23S rRNA m5C1962 methyltransferase monomer (rlmI) ,
fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase (rlmL) ,
tRNA Cm32/Um32 methyltransferase (trmJ) ,
tRNA (Gm18) 2'-O-methyltransferase (trmH) ,
ribonuclease G (RNAse G) monomer (rng) ,
16S rRNA m5C967 methyltransferase (rsmB) ,
23S rRNA pseudouridine 2457 synthase (rluE) ,
toxin of the YoeB-YefM toxin-antitoxin pair ,
poly(A) polymerase I (pcnB) ,
RNA 3'-terminal phosphate cyclase (rtcA) ,
23S rRNA pseudouridine synthase (rluD) ,
23S rRNA m5U1939 methyltransferase (rlmD) ,
tRNA pseudouridine 65 synthase (truC) ,
tRNA-specific 2-thiouridylase (mnmA) ,
23S rRNA and tRNA pseudouridine synthase (rluA) ,
ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system ,
translation-dependent mRNA interferase, toxin of the HigB-HigA toxin-antitoxin system ,
toxin of the YafQ-DinJ toxin-antitoxin system ,
Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB ,
tRNA (cytidine/uridine-2'-O)-ribose methyltransferase (trmL) ,
RNase III (rnc) ,
23S rRNA m6A2030 methyltransferase (rlmJ) ,
16S rRNA pseudouridine 516 synthase (rsuA) ,
ThiI ,
polynucleotide phosphorylase monomer (pnp) ,
RNase E (rne) ,
RNase I, cleaves phosphodiester bond between any two nucleotides ,
RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) ,
16S rRNA m5C1407 methyltransferase (rsmF) ,
23S rRNA pseudouridine 2605 synthase (rluB) ,
ribonuclease II (rnb) ,
tRNA pseudouridine 55 synthase (truB) ,
mRNA cap guanine-N7 methyltransferase (RNMT) ,
H+-translocating V-ATPase subunit G2 (ATP6V1G2) ,
2'-5'-oligoadenylate synthetase 3 (OAS3) ,
2'-5'-oligoadenylate synthetase 2 monomer (OAS2) ,
RNAse L (RNASEL) ,
2'-5'-oligoadenylate synthetase 1 monomer (OAS1) ,
ThiI

Unification Links: GO:0003723


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
Page generated by SRI International Pathway Tools version 19.0 on Wed Sep 2, 2015, biocyc12.