MetaCyc All-Genes Class: adaptations

The adaptation to stress was meant to cover the classical stress inducers such as osmotic pressure, temperature, starvation. The protection category was meant to cover those related to compound / chemical induced killing or stress. The defense/survival category was meant to cover virulence factors (although K-12 does not have many).

Parent Classes:
cell processes

Child Classes:
dessication (7) ,
Fe aquisition (19) ,
osmotic pressure (13) ,
other (mechanical, nutritional, oxidative stress) (20) ,
pH (7) ,
starvation (11) ,
temperature extremes (9)

cusF (copper / silver efflux system - periplasmic binding protein and metallochaperone) ,
dosC (diguanylate cyclase) ,
dosP (c-di-GMP phosphodiesterase, heme-regulated) ,
dsbA (protein disulfide oxidoreductase - DsbAoxidised) ,
gmr (cyclic di-GMP phosphodiesterase) ,
yfgF (cyclic di-GMP phosphodiesterase)

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Please cite the following article in publications resulting from the use of MetaCyc: Caspi et al, Nucleic Acids Research 42:D459-D471 2014
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