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discounted EARLY registration ends Dec 31, 2014
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 Growth Medium: PMA nitrogen source test + D-valine

Superclasses: Phenotype-Microarray-Media

Plate and Well ID: Biolog PM3 - Nitrogen Sources: C9

Citations: [Bochner01]

Recipe Substances: ?
Substances Concentration Role
D-valine Source of N
disodium phosphate 2 mM Source of P
ferric chloride 1 µM  
MgCl2 50 µM  
potassium chloride 1 mM  
sodium chloride 100 mM  
sodium pyruvate 25 mM Source of C
sodium sulfate 250 µM Source of S
triethanolamine HCI 30 mM  
Composition: ?
Constituents Concentration
chloride 131.1 mM
Na+ 129.5 mM
triethanolamine 30 mM
pyruvate 25 mM
phosphate 2 mM
K+ 1 mM
sulfate 250 µM
Mg2+ 50 µM
Fe3+ 1 µM
D-valine [unknown]

Wildtype growth observations:

T (°C) O2 Growth Observations Consensus
37 Aerobic No [AbuOun09]
Yes [Bochner12]
Low [Yoon12]
Indeterminate

References

AbuOun09: AbuOun M, Suthers PF, Jones GI, Carter BR, Saunders MP, Maranas CD, Woodward MJ, Anjum MF (2009). "Genome scale reconstruction of a Salmonella metabolic model: comparison of similarity and differences with a commensal Escherichia coli strain." J Biol Chem 284(43);29480-8. PMID: 19690172

Bochner01: Bochner BR, Gadzinski P, Panomitros E (2001). "Phenotype microarrays for high-throughput phenotypic testing and assay of gene function." Genome Res 11(7);1246-55. PMID: 11435407

Bochner12: Bochner B (2012). Personal communication.

Yoon12: Yoon SH, Han MJ, Jeong H, Lee CH, Xia XX, Lee DH, Shim JH, Lee SY, Oh TK, Kim JF (2012). "Comparative multi-omics systems analysis of Escherichia coli strains B and K-12." Genome Biol 13(5);R37. PMID: 22632713


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Mon Dec 22, 2014, BIOCYC14B.