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Escherichia coli K-12 substr. MG1655 Polypeptide: predicted enzyme



Gene: yncG Accession Numbers: G6765 (EcoCyc), b1454, ECK1448

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on April 24, 2008.

Locations: cytosol

Map Position: [1,524,271 -> 1,524,888] (32.85 centisomes)
Length: 618 bp / 205 aa

Molecular Weight of Polypeptide: 23.321 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0004851 , EchoBASE:EB3539 , EcoGene:EG13777 , EcoliWiki:b1454 , ModBase:P76117 , OU-Microarray:b1454 , PortEco:yncG , Pride:P76117 , Protein Model Portal:P76117 , RefSeq:NP_415971 , RegulonDB:G6765 , SMR:P76117 , String:511145.b1454 , UniProt:P76117

Relationship Links: InterPro:IN-FAMILY:IPR004045 , InterPro:IN-FAMILY:IPR010987 , InterPro:IN-FAMILY:IPR012336 , InterPro:IN-FAMILY:IPR017933 , Pfam:IN-FAMILY:PF13417 , Prosite:IN-FAMILY:PS50404 , Prosite:IN-FAMILY:PS50405

GO Terms:

Biological Process: GO:0008152 - metabolic process Inferred by computational analysis [UniProtGOA11a]
Molecular Function: GO:0016740 - transferase activity Inferred by computational analysis [UniProtGOA11a]
Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

Gene Class: ORFs

Essentiality data for yncG knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Credits:
Last-Curated ? 24-Apr-2008 by Keseler I , SRI International


Sequence Features

Feature Class Location Citations Comment
Conserved-Region 1 -> 82
[UniProt09]
UniProt: GST N-terminal;
Conserved-Region 86 -> 205
[UniProt09]
UniProt: GST C-terminal;


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

UniProt09: UniProt Consortium (2009). "UniProt version 15.8 released on 2009-10-01 00:00:00." Database.

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."

Other References Related to Gene Regulation

MendozaVargas09: Mendoza-Vargas A, Olvera L, Olvera M, Grande R, Vega-Alvarado L, Taboada B, Jimenez-Jacinto V, Salgado H, Juarez K, Contreras-Moreira B, Huerta AM, Collado-Vides J, Morett E (2009). "Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli." PLoS One 4(10);e7526. PMID: 19838305


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, BIOCYC13A.