Escherichia coli K-12 substr. MG1655 Polypeptide: conserved protein, rhs-like

Gene: ybfO Accession Numbers: G6376 (EcoCyc), b0703, ECK0691

Regulation Summary Diagram: ?

Regulation summary diagram for ybfO

No information about this protein was found by a literature search conducted on March 13, 2006.

Map Position: [733,443 -> 734,876] (15.81 centisomes, 57°)
Length: 1434 bp / 477 aa

Molecular Weight of Polypeptide: 55.232 kD (from nucleotide sequence)

Unification Links: DIP:DIP-11386N , EchoBASE:EB3425 , EcoGene:EG13661 , EcoliWiki:b0703 , OU-Microarray:b0703 , PortEco:ybfO , Protein Model Portal:P77779 , RefSeq:NP_415231 , RegulonDB:G6376 , SMR:P77779 , String:316407.ybfO , UniProt:P77779

Relationship Links: InterPro:IN-FAMILY:IPR001826 , InterPro:IN-FAMILY:IPR006530 , InterPro:IN-FAMILY:IPR022385 , Pfam:IN-FAMILY:PF03527 , Pfam:IN-FAMILY:PF05593 , Prints:IN-FAMILY:PR00394

GO Terms:

Biological Process: GO:0097264 - self proteolysis Inferred by computational analysis [GOA01a]

Gene Class: Pseudo-Genes

Essentiality data for ybfO knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Last-Curated ? 13-Mar-2006 by Keseler I , SRI International

Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram


Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Tue Oct 6, 2015, biocyc14.