Escherichia coli K-12 substr. MG1655 Polypeptide: predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain

Gene: ygbJ Accession Numbers: G7417 (EcoCyc), b2736, ECK2731

Regulation Summary Diagram: ?

Regulation summary diagram for ygbJ

No information about this protein was found by a literature search conducted on February 13, 2006.

Locations: cytosol

Map Position: [2,859,452 -> 2,860,360] (61.63 centisomes, 222°)
Length: 909 bp / 302 aa

Molecular Weight of Polypeptide: 30.751 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0008986 , EchoBASE:EB2907 , EcoGene:EG13104 , EcoliWiki:b2736 , ModBase:Q46888 , OU-Microarray:b2736 , PortEco:ygbJ , Protein Model Portal:Q46888 , RefSeq:NP_417216 , RegulonDB:G7417 , SMR:Q46888 , String:511145.b2736 , UniProt:Q46888

Relationship Links: InterPro:IN-FAMILY:IPR002204 , InterPro:IN-FAMILY:IPR006115 , InterPro:IN-FAMILY:IPR008927 , InterPro:IN-FAMILY:IPR013328 , InterPro:IN-FAMILY:IPR015815 , InterPro:IN-FAMILY:IPR016040 , InterPro:IN-FAMILY:IPR029154 , Panther:IN-FAMILY:PTHR22981 , Pfam:IN-FAMILY:PF03446 , Pfam:IN-FAMILY:PF14833 , Prosite:IN-FAMILY:PS00895

In Paralogous Gene Group: 369 (5 members)

Genetic Regulation Schematic: ?

Genetic regulation schematic for ygbJ

GO Terms:

Biological Process: GO:0055114 - oxidation-reduction process Inferred by computational analysis [UniProtGOA11a, GOA01a]
Molecular Function: GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity Inferred by computational analysis [GOA01a]
GO:0016491 - oxidoreductase activity Inferred by computational analysis [UniProtGOA11a, GOA01a]
GO:0051287 - NAD binding Inferred by computational analysis [GOA01a]
Cellular Component: GO:0005829 - cytosol Inferred by computational analysis [DiazMejia09]

Gene Class: ORFs Conserved-ORFs

Essentiality data for ygbJ knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Sequence Features

Protein sequence of predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain with features indicated

Feature Class Location Citations Comment
Nucleotide-Phosphate-Binding-Region 10 -> 24
UniProt: NAD; Non-Experimental Qualifier: by similarity;
Amino-Acid-Sites-That-Bind 102
UniProt: NAD; Non-Experimental Qualifier: by similarity;
Active-Site 178
UniProt: Non-Experimental Qualifier: by similarity;
Amino-Acid-Sites-That-Bind 246
UniProt: NAD; Non-Experimental Qualifier: by similarity;

Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Units:

Transcription-unit diagram

Transcription-unit diagram


Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

DiazMejia09: Diaz-Mejia JJ, Babu M, Emili A (2009). "Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome." FEMS Microbiol Rev 33(1);66-97. PMID: 19054114

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

UniProt10: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."

Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Mon Oct 5, 2015, biocyc13.