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Escherichia coli K-12 substr. MG1655 Polypeptide: predicted transposase; receptor protein



Gene: ybfL Accession Numbers: G6377 (EcoCyc), b0705, ECK0694

Regulation Summary Diagram: ?

Summary:
No information about this protein was found by a literature search conducted on October 12, 2006.

Map Position: [736,123 -> 737,184] (15.87 centisomes)
Length: 1062 bp / 353 aa

Molecular Weight of Polypeptide: 40.073 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0002407 , EchoBASE:EB3193 , EcoGene:EG13417 , EcoliWiki:b0705 , OU-Microarray:b0705 , PortEco:ybfL , Pride:P75741 , RefSeq:NP_415233 , RegulonDB:G6377 , UniProt:P75741

Relationship Links: EcoO157Cyc:Homolog:Z0700 , EcoO157Cyc:Homolog:Z0700-MONOMER , EcoO157Cyc:Homolog:Z0854 , EcoO157Cyc:Homolog:Z0854-MONOMER , EcoO157Cyc:Homolog:Z0857 , EcoO157Cyc:Homolog:Z0857-MONOMER , EcoO157Cyc:Homolog:Z2253 , EcoO157Cyc:Homolog:Z2253-MONOMER , InterPro:IN-FAMILY:IPR002559 , Pfam:IN-FAMILY:PF01609

In Paralogous Gene Group: 296 (3 members)

GO Terms:

Biological Process: GO:0006313 - transposition, DNA-mediated Inferred by computational analysis [GOA01a]
Molecular Function: GO:0003677 - DNA binding Inferred by computational analysis [GOA01a]
GO:0004803 - transposase activity Inferred by computational analysis [GOA01a]

MultiFun Terms: All-Genes Pseudo-Genes
MultiFun extrachromosomal transposon related

Essentiality data for ybfL knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]

Credits:
Last-Curated ? 12-Oct-2006 by Keseler I , SRI International


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Peter D. Karp on Wed Jan 18, 2006:
Gene left-end position adjusted based on analysis performed in the 2005 E. coli annotation update [Riley06 ].
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

GOA01a: GOA, DDB, FB, MGI, ZFIN (2001). "Gene Ontology annotation through association of InterPro records with GO terms."

Riley06: Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL (2006). "Escherichia coli K-12: a cooperatively developed annotation snapshot--2005." Nucleic Acids Res 34(1);1-9. PMID: 16397293


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Nov 27, 2014, biocyc12.