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discounted EARLY registration ends Dec 31, 2014
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for maintenance.
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discounted EARLY registration ends Dec 31, 2014
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Escherichia coli K-12 substr. MG1655 Polypeptide: outer membrane protein



Gene: yaiO Accession Numbers: G6210 (EcoCyc), b0358, ECK0355

Regulation Summary Diagram: ?

Summary:
YaiO localizes to the outer membrane in E. coli [Marani06].

Locations: outer membrane

Map Position: [379,293 <- 380,066] (8.17 centisomes)
Length: 774 bp / 257 aa

Molecular Weight of Polypeptide: 29.04 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0001230 , EchoBASE:EB3082 , EcoGene:EG13297 , EcoliWiki:b0358 , OU-Microarray:b0358 , PortEco:yaiO , Pride:Q47534 , Protein Model Portal:Q47534 , RefSeq:NP_414892 , RegulonDB:G6210 , String:511145.b0358 , UniProt:Q47534

Relationship Links: InterPro:IN-FAMILY:IPR016504

GO Terms:

Cellular Component: GO:0009279 - cell outer membrane Inferred from experiment [Marani06]

Gene Class: UNCLASSIFIED

Essentiality data for yaiO knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Credits:
Last-Curated ? 07-Jul-2014 by Keseler I , SRI International


Gene Local Context (not to scale): ?

Transcription Unit:

Notes:

History:
Peter D. Karp on Thu Jan 16, 2003:
Predicted gene function revised as a result of E. coli genome reannotation by Serres et al. [Serres01 ].
Markus Krummenacker on Tue Oct 14, 1997:
Gene object created from Blattner lab Genbank (v. M52) entry.


References

Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Marani06: Marani P, Wagner S, Baars L, Genevaux P, de Gier JW, Nilsson I, Casadio R, von Heijne G (2006). "New Escherichia coli outer membrane proteins identified through prediction and experimental verification." Protein Sci 15(4);884-9. PMID: 16522795

Serres01: Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M (2001). "A functional update of the Escherichia coli K-12 genome." Genome Biol 2(9);RESEARCH0035. PMID: 11574054


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, BIOCYC13A.