Escherichia coli K-12 substr. MG1655 Polypeptide: predicted lipoprotein

Gene: yceB Accession Numbers: EG11117 (EcoCyc), b1063, ECK1048

Regulation Summary Diagram: ?

Regulation summary diagram for yceB

No information about this protein was found by a literature search conducted on April 10, 2008.

Locations: inner membrane

Map Position: [1,121,936 <- 1,122,496] (24.18 centisomes, 87°)
Length: 561 bp / 186 aa

Molecular Weight of Polypeptide: 20.5 kD (from nucleotide sequence)

Unification Links: ASAP:ABE-0003611 , EchoBASE:EB1107 , EcoGene:EG11117 , EcoliWiki:b1063 , OU-Microarray:b1063 , PortEco:yceB , Protein Model Portal:P0AB26 , RefSeq:NP_415581 , RegulonDB:EG11117 , SMR:P0AB26 , String:511145.b1063 , UniProt:P0AB26

Relationship Links: InterPro:IN-FAMILY:IPR010835 , PDB:Structure:3L6I , Pfam:IN-FAMILY:PF07273 , Prosite:IN-FAMILY:PS51257

GO Terms:

Cellular Component: GO:0005886 - plasma membrane Inferred by computational analysis [UniProtGOA11, UniProtGOA11a]
GO:0016020 - membrane Inferred by computational analysis [UniProtGOA11a]

Gene Class: ORFs Conserved-Hypothetical-ORFs

Essentiality data for yceB knockouts: ?

Growth Medium Growth? T (°C) O2 pH Osm/L Growth Observations
LB enriched Yes 37 Aerobic 6.95   Yes [Gerdes03, Comment 1]
LB Lennox Yes 37 Aerobic 7   Yes [Baba06, Comment 2]
M9 medium with 1% glycerol Yes 37 Aerobic 7.2 0.35 Yes [Joyce06, Comment 3]
MOPS medium with 0.4% glucose Yes 37 Aerobic 7.2 0.22 Yes [Baba06, Comment 2]

Last-Curated ? 10-Apr-2008 by Keseler I , SRI International

Sequence Features

Protein sequence of predicted lipoprotein with features indicated

Feature Class Location Citations Comment
Signal-Sequence 1 -> 18
UniProt: Non-Experimental Qualifier: potential;
Lipid-Binding-Site 19
UniProt: N-palmitoyl cysteine; Non-Experimental Qualifier: potential;
Chain 19 -> 186
UniProt: Uncharacterized lipoprotein yceB;

Gene Local Context (not to scale): ?

Gene local context diagram

Transcription Unit:

Transcription-unit diagram


Peter D. Karp on Thu Jan 16, 2003:
Predicted gene function revised as a result of E. coli genome reannotation by Serres et al. [Serres01 ].
10/20/97 Gene b1063 from Blattner lab Genbank (v. M52) entry merged into EcoCyc gene EG11117; confirmed by SwissProt match.


Baba06: Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H (2006). "Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection." Mol Syst Biol 2;2006.0008. PMID: 16738554

Gerdes03: Gerdes SY, Scholle MD, Campbell JW, Balazsi G, Ravasz E, Daugherty MD, Somera AL, Kyrpides NC, Anderson I, Gelfand MS, Bhattacharya A, Kapatral V, D'Souza M, Baev MV, Grechkin Y, Mseeh F, Fonstein MY, Overbeek R, Barabasi AL, Oltvai ZN, Osterman AL (2003). "Experimental determination and system level analysis of essential genes in Escherichia coli MG1655." J Bacteriol 185(19);5673-84. PMID: 13129938

Joyce06: Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BO, Agarwalla S (2006). "Experimental and computational assessment of conditionally essential genes in Escherichia coli." J Bacteriol 188(23);8259-71. PMID: 17012394

Serres01: Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M (2001). "A functional update of the Escherichia coli K-12 genome." Genome Biol 2(9);RESEARCH0035. PMID: 11574054

UniProt09: UniProt Consortium (2009). "UniProt version 15.8 released on 2009-10-01 00:00:00." Database.

UniProt10a: UniProt Consortium (2010). "UniProt version 2010-07 released on 2010-06-15 00:00:00." Database.

UniProtGOA11: UniProt-GOA (2011). "Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries."

UniProtGOA11a: UniProt-GOA (2011). "Gene Ontology annotation based on manual assignment of UniProtKB keywords in UniProtKB/Swiss-Prot entries."

Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 19.0 on Mon Oct 5, 2015, BIOCYC14B.