Escherichia coli K-12 substr. MG1655 All-Genes Class: Interrupted-Genes

Interrupted genes are pseudogenes that are not functional because they contain an interruption such as a premature stop codon, or a prophage insert. Imagine a pseudogene that is interrupted by two internal stop codons. This situation would be represented by creating three instances of Interrupted-Genes, one for each fragment of the pseudo gene.

Parent Classes:

arpB_1 (predicted protein, N-ter fragment),
arpB_2 (predicted protein, C-ter fragment),
bcsQ (cellulose biosynthesis protein, pseudogene lacking N-terminal amino acids),
crl (RNA polymerase holoenzyme assembly factor Crl),
efeU_1 (hypothetical protein of the OFeT transport family),
gapC_1 (split glyceraldehyde 3-phosphate dehydrogenase C),
gapC_2 (glyceraldehyde 3-phosphate dehydrogenase C, interrupted),
gatR_1 (negative DNA-binding transcriptional regulator of galactitol metabolism),
glvB (GlvB subunit of predicted PTS permease (pseudogene)),
glvC (GlvC subunit of predicted PTS permease (pseudogene)),
ilvG_1 (acetolactate synthase II, large subunit, N-ter fragment (pseudogene)),
ilvG_2 (acetolactate synthase II, large subunit, C-ter fragment (pseudogene)),
lomR_1 (Rac prophage; predicted protein, N-ter fragment),
lomR_2 (Rac prophage; predicted protein, C-ter fragment),
molR_1 (molybdate metabolism regulator (interrupted)),
molR_2 (twice split molybdate metabolism regulator),
molR_3 (twice split molybdate metabolism regulator),
wbbL_1 (lipopolysaccharide biosynthesis protein, N-ter fragment),
yaiF (predicted protein),
yaiX (predicted acyl transferase (pseudogene)),
ycgH_1 (conserved protein; member of the Autotransporter family),
ycgH_2 (conserved protein; member of the Autotransporter family),
ychE_1 (predicted protein, N-ter fragment (pseudogene)),
ydbA_1 (predicted outer membrane protein, N-ter fragment),
ydbA_2 (predicted outer membrane protein, C-ter fragment),
yedN_1 (predicted protein, C-ter fragment),
yedN_2 (predicted protein, N-ter fragment),
yedS_1 (predicted protein, N-ter fragment),
yedS_2 (predicted protein, middle fragment),
yedS_3 (predicted protein, C-ter fragment),
yeeL_1 (predicted protein, N-terminal fragment),
yeeL_2 (predicted protein, C-terminal fragment),
yfaS_1 (predicted protein, N-ter fragment),
yfaS_2 (predicted protein, C-ter fragment),
yfcT (fimbrial usher protein, C-terminal fragment),
yfcU (fimbrial usher protein, N-terminal fragment),
ygaQ (predicted protein (pseudogene)),
yghX_1 (predicted hydrolase),
yghX_2 (predicted hydrolase),
yhiS_1 (predicted protein),
yjgX_1 (KpLE2 phage-like element; predicted protein, N-ter fragment),
yjgX_2 (KpLE2 phage-like element; predicted protein),
yncK_1 (predicted transposase, N-ter fragment),
yncK_2 (predicted transposase, C-ter fragment),
yoeA (CP4-44 prophage; predicted disrupted hemin or colicin receptor),
yoeE (CP4-44 prophage; predicted disrupted hemin or colicin receptor),
ypjM_2 (CP4-57 prophage; predicted protein)

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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
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