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discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
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Escherichia coli K-12 substr. MG1655 All-Genes Class: Interrupted-Genes

Summary:
Interrupted genes are pseudogenes that are not functional because they contain an interruption such as a premature stop codon, or a prophage insert. Imagine a pseudogene that is interrupted by two internal stop codons. This situation would be represented by creating three instances of Interrupted-Genes, one for each fragment of the pseudo gene.

Parent Classes:
Pseudo-Genes

Instances:
arpB_1 (predicted protein, N-ter fragment) ,
arpB_2 (predicted protein, C-ter fragment) ,
bcsQ (cellulose biosynthesis protein, pseudogene lacking N-terminal amino acids) ,
cybC ,
efeU_1 (hypothetical protein of the OFeT transport family) ,
efeU_2 ,
gapC_1 (split glyceraldehyde 3-phosphate dehydrogenase C) ,
gapC_2 (glyceraldehyde 3-phosphate dehydrogenase C, interrupted) ,
gatR_1 (negative DNA-binding transcriptional regulator of galactitol metabolism) ,
gatR_2 ,
glvB (GlvB subunit of predicted PTS permease (pseudogene)) ,
glvC (GlvC subunit of predicted PTS permease (pseudogene)) ,
ilvG_1 (acetolactate synthase II, large subunit, N-ter fragment (pseudogene)) ,
ilvG_2 (acetolactate synthase II, large subunit, C-ter fragment (pseudogene)) ,
insB-7_1 ,
insB-7_2 ,
lomR_1 (Rac prophage; predicted protein, N-ter fragment) ,
lomR_2 (Rac prophage; predicted protein, C-ter fragment) ,
molR_1 (molybdate metabolism regulator (interrupted)) ,
molR_2 (twice split molybdate metabolism regulator) ,
molR_3 (twice split molybdate metabolism regulator) ,
wbbL_1 (lipopolysaccharide biosynthesis protein, N-ter fragment) ,
wbbL_2 ,
yaiF (predicted protein) ,
yaiX (predicted acyl transferase (pseudogene)) ,
ycgH_1 (conserved protein; member of the Autotransporter family) ,
ycgH_2 (conserved protein; member of the Autotransporter family) ,
ychE_1 (predicted protein, N-ter fragment (pseudogene)) ,
ychE_2 ,
ydbA_1 (predicted outer membrane protein, N-ter fragment) ,
ydbA_2 (predicted outer membrane protein, C-ter fragment) ,
yedN_1 (predicted protein, C-ter fragment) ,
yedN_2 (predicted protein, N-ter fragment) ,
yedS_1 (predicted protein, N-ter fragment) ,
yedS_2 (predicted protein, middle fragment) ,
yedS_3 (predicted protein, C-ter fragment) ,
yeeL_1 (predicted protein, N-terminal fragment) ,
yeeL_2 (predicted protein, C-terminal fragment) ,
yfaS_1 (predicted protein, N-ter fragment) ,
yfaS_2 (predicted protein, C-ter fragment) ,
yfcT (fimbrial usher protein, C-terminal fragment) ,
yfcU (fimbrial usher protein, N-terminal fragment) ,
ygaQ_1 (predicted protein) ,
ygaQ_2 (predicted protein) ,
ygaQ_3 (conserved protein) ,
ygaQ_4 (conserved protein) ,
yghX_1 (predicted hydrolase) ,
yghX_2 (predicted hydrolase) ,
yhiS_1 (predicted protein) ,
yhiS_2 ,
yjgX_1 (KpLE2 phage-like element; predicted protein, N-ter fragment) ,
yjgX_2 (KpLE2 phage-like element; predicted protein) ,
yjgX_3 ,
ylbE_1 (predicted protein, N-ter fragment) ,
ylbE_2 (predicted protein, C-ter fragment) ,
yncK_1 (predicted transposase, N-ter fragment) ,
yncK_2 (predicted transposase, C-ter fragment) ,
yoeA (CP4-44 prophage; predicted disrupted hemin or colicin receptor) ,
yoeE (CP4-44 prophage; predicted disrupted hemin or colicin receptor) ,
ypjM_2 (CP4-57 prophage; predicted protein)


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, BIOCYC14A.