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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
BioCyc websites down
12/28 - 12/31
for maintenance.
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Escherichia coli K-12 substr. MG1655 Gene-Ontology-Terms Class: GO:0005622 - intracellular

Synonyms: internal to cell, protoplasm

Definition: The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Parent Classes:
GO:0044464 - cell part

Part Of:
GO:0005623 - cell

Parts:
GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane (13) ,
GO:0044424 - intracellular part (2641) ,
GO:0009366 - enterobactin synthetase complex (4) ,
GO:0045252 - oxoglutarate dehydrogenase complex (2) ,
GO:0043229 - intracellular organelle (81) ,
GO:0030529 - ribonucleoprotein complex (83) ,
GO:0009289 - pilus (40) ,
GO:0005737 - cytoplasm (1017)

Term Members:
TatB ,
TatC ,
30S ribosomal subunit protein S21 (rpsU) ,
predicted enzyme (yggS) ,
SecY ,
SecG ,
SecE ,
SecF ,
SecD ,
30S ribosomal subunit protein S14 (rpsN) ,
50S ribosomal subunit protein L5 (rplE) ,
50S ribosomal subunit protein L22 (rplV) ,
50S ribosomal subunit protein L2 (rplB) ,
aminopeptidase B (pepB) ,
GTPase, involved in modification of U34 in tRNA (mnmE) ,
ATP-dependent DNA helicase (recQ) ,
cobalamin-dependent methionine synthase ,
elongation factor Tu (tufA) ,
30S ribosomal subunit protein S15 (rpsO) ,
30S ribosomal subunit protein S3 (rpsC) ,
30S ribosomal subunit protein S2 (rpsB) ,
30S ribosomal subunit protein S13 (rpsM) ,
30S ribosomal subunit protein S11 (rpsK) ,
30S ribosomal subunit protein S10 (rpsJ) ,
protein chain elongation factor EF-Ts (tsf) ,
elongation factor G (fusA) ,
acetate kinase (ackA) ,
GTP-binding protein (era) ,
predicted DNA-binding transcriptional regulator (ydjF) ,
DNA-binding transcriptional regulator (yciT) ,
aminopeptidase A/I (pepA) ,
predicted DNA-binding transcriptional regulator, DEOR-type (ygbI) ,
CP4-57 prophage; predicted DNA-binding transcriptional regulator (yfjR) ,
KpLE2 phage-like element; predicted DNA-binding transcriptional regulator (sgcR) ,
protein-glutamine N-methyltransferase (prmB) ,
ArsR ,
negative DNA-binding transcriptional regulator of galactitol metabolism (gatR_1) ,
GatR_2 ,
predicted DNA-binding transcriptional regulator (yihW) ,
MarR transcriptional repressor ,
GutR DNA-binding transcriptional repressor (srlR) ,
propionate kinase (tdcD) ,
elongation factor Tu (tufB) ,
50S ribosomal subunit protein L6 (rplF) ,
NagC DNA-binding transcriptional dual regulator ,
50S ribosomal subunit protein L23 (rplW) ,
50S ribosomal subunit protein L16 (rplP) ,
MprA ,
GlpR DNA-binding transcriptional repressor ,
FucR transcriptional activator ,
DeoR DNA-binding transcriptional repressor ,
AgaR DNA-binding transcriptional repressor ,
CRP transcriptional dual regulator ,
predicted DNA-binding transcriptional regulator (ybaO) ,
Lrp transcriptional dual regulator ,
AsnC ,
H-NS-like DNA-binding protein with RNA chaperone activity (stpA) ,
H-NS DNA-binding transcriptional dual regulator (hns) ,
UlaR DNA-binding transcriptional repressor ,
FNR ,
CheW ,
SlyA DNA-binding transcriptional activator ,
TrpR ,
30S ribosomal subunit protein S4 (rpsD) ,
50S ribosomal subunit protein L10 (rplJ) ,
protein chain initiation factor IF2 (infB) ,
RNase D (rnd) ,
exonuclease III (xthA) ,
CheA ,
NtrB (glnL)

Unification Links: GO:0005622


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sun Dec 21, 2014, biocyc14.