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Metabolic Modeling Tutorial
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Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
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Escherichia coli K-12 substr. MG1655 All-Genes Class: transcriptional level

Parent Classes:
type of regulation

Child Classes:
action unknown (1) ,
activator (150) ,
complex regulation (61) ,
repressor (158) ,
sigma factors, anti-sigmafactors (14)

Instances:
abgR (predicted DNA-binding transcriptional regulator, LYSR-type) ,
abrB (predicted regulator) ,
bdcR (predicted transcriptional regulator) ,
comR (ComR DNA-binding transcriptional repressor) ,
cspC (stress protein, member of the CspA family) ,
cspE (transcription antiterminator and regulator of RNA stability) ,
dmlR (DmlR DNA-binding transcriptional regulator) ,
ecpR (MatA DNA-binding transcriptional dual regulator) ,
feoC (predicted DNA-binding transcriptional regulator) ,
greA (transcription elongation factor GreA) ,
greB (transcription elongation factor GreB) ,
hepA (RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor) ,
higA (antitoxin of the HigB-HigA toxin-antitoxin system) ,
hupA (transcriptional dual regulator HU-α (HU-2)) ,
hupB (transcriptional dual regulator HU-β, NS1 (HU-1)) ,
ibaG (predicted DNA-binding transcriptional regulator) ,
lgoR (predicted DNA-binding transcriptional regulator) ,
mcbR (McbR DNA-binding transcriptional dual regulator) ,
mlrA (MlrA DNA binding transcriptional activator) ,
mntR ,
murR ,
nemR (NemR DNA-binding transcriptional repressor) ,
nusA (transcription termination/antitermination L factor) ,
puuR (PuuR DNA-binding transcriptional repressor) ,
qseB (QseB-Phosphorylated DNA-binding transcriptional activator) ,
racR (Rac prophage; predicted DNA-binding transcriptional regulator) ,
rof (modulator of Rho-dependent transcription termination) ,
rplD (50S ribosomal subunit protein L4) ,
rpsJ (30S ribosomal subunit protein S10) ,
rtcR (RtcR DNA-binding transcriptional activator) ,
sspA (stringent starvation protein A) ,
ssrS (6S RNA) ,
torI (prophage excisionase and response regulator inhibitor) ,
yagP (predicted transcriptional regulator LYSR-type) ,
yahD (predicted transcriptional regulator with ankyrin domain) ,
yaiV (predicted DNA-binding transcriptional regulator) ,
yaiW (surface exposed outer membrane lipoprotein) ,
ybaQ (predicted DNA-binding transcriptional regulator) ,
ybdO (predicted DNA-binding transcriptional regulator LYSR-type) ,
ybhD (predicted DNA-binding transcriptional regulator) ,
ybiH (predicted DNA-binding transcriptional regulator) ,
ychA (predicted transcriptional regulator) ,
ychQ (predicted transcriptional regulator) ,
ydcN (predicted DNA-binding transcriptional regulator) ,
ydcR (fused predicted DNA-binding transcriptional regulator and predicted amino transferase) ,
yddM (predicted DNA-binding transcriptional regulator) ,
ydhB (protein with similarity to transcriptional regulators) ,
ydiP (predicted DNA-binding transcriptional regulator) ,
ydjF (predicted DNA-binding transcriptional regulator) ,
yeaM (predicted DNA-binding transcriptional regulator) ,
yebK (predicted DNA-binding transcriptional regulator) ,
yehT (YehT-Phosphorylated DNA-binding transcriptional activator) ,
yfaX (predicted DNA-binding transcriptional regulator) ,
yfeD (predicted DNA-binding transcriptional regulator) ,
yfhH (predicted DNA-binding transcriptional regulator) ,
ygaV (predicted DNA-binding transcriptional regulator) ,
ygeH (predicted transcriptional regulator) ,
yghO (predicted DNA-binding transcriptional regulator) ,
ygiV (YgiV DNA-binding transcriptional repressor) ,
yhcF (predicted transcriptional regulator) ,
yiaG (predicted transcriptional regulator) ,
yidF (predicted DNA-binding transcriptional regulator) ,
yifE (conserved protein) ,
yiiE (predicted transcriptional regulator) ,
yjdC (predicted transcriptional regulator) ,
yjhU (KpLE2 phage-like element; predicted DNA-binding transcriptional regulator) ,
ynfL (predicted DNA-binding transcriptional regulator) ,
yphH (predicted DNA-binding transcriptional regulator, NAGC-like) ,
yqgF (predicted transcription antitermination factor) ,
yqjI (YqjI DNA-binding transcriptional repressor) ,
ytfA (predicted transcriptional regulator) ,
ytfH (predicted transcriptional regulator)


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Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Thu Dec 18, 2014, biocyc13.