Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
Metabolic Modeling Tutorial
discounted EARLY registration ends Dec 31, 2014
twitter

Escherichia coli K-12 substr. MG1655 All-Genes Class: Transcription related

Parent Classes:
RNA related

Instances:
aaeR (quorum sensing transcriptional regulator of LYSR-type) ,
abgR (predicted DNA-binding transcriptional regulator, LYSR-type) ,
acrR (AcrR DNA-binding transcriptional repressor) ,
ada (Ada DNA-binding transcriptional dual regulator) ,
adiY (AdiY DNA-binding transcriptional activator) ,
agaR (AgaR DNA-binding transcriptional repressor) ,
allR (AllR DNA-binding transcriptional repressor) ,
allS (AllS transcriptional activator) ,
alpA (AlpA DNA-binding transcriptional activator; CP4-57 prophage) ,
appY (AppY DNA-binding transcriptional activator) ,
araC ,
arcA (ArcA-Phosphorylated DNA-binding transcriptional dual regulator) ,
argP (ArgP transcriptional activator) ,
argR ,
arsR ,
ascG (AscG DNA-binding transcriptional repressor) ,
asnC ,
atoC (AtoC-phosphorylated DNA-binding transcriptional activator) ,
baeR (BaeR-Phosphorylated DNA-binding transcriptional activator) ,
basR (BasR-Phosphorylated transcriptional regulator) ,
bdcR (predicted transcriptional regulator) ,
betI (BetI DNA-binding transcriptional repressor) ,
bglG (BglG transcriptional antiterminator (monomer)) ,
bglJ (BglJ DNA-binding transcriptional regulator) ,
birA (bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor) ,
bluR (BluR DNA-binding transcriptional repressor) ,
bolA (BolA DNA-binding transcriptional dual regulator) ,
cadC (CadC DNA-binding transcriptional activator) ,
caiF ,
cbl (Cbl DNA-binding transcriptional activator) ,
cdaR (CdaR DNA-binding transcriptional activator) ,
chbR (ChbR DNA-binding transcriptional dual regulator) ,
cpxP (regulator of the Cpx response and possible chaperone involved in resistance to extracytoplasmic stress) ,
cpxR (CpxR-Phosphorylated) ,
cra (Cra DNA-binding transcriptional dual regulator) ,
creB (CreB-Phosphorylated DNA-binding transcriptional regulator) ,
crl (RNA polymerase holoenzyme assembly factor Crl) ,
crp (CRP transcriptional dual regulator) ,
csgD (CsgD DNA-binding transcriptional dual regulator) ,
csiR (CsiR DNA-binding transcriptional repressor) ,
cspA (CspA DNA-binding transcriptional activator) ,
cspC (stress protein, member of the CspA family) ,
cueR (CueR transcriptional dual regulator) ,
cusR (CusR-Pasp DNA binding transcriptional activator) ,
cynR (CynR DNA-binding transcriptional repressor) ,
cysB ,
cytR ,
dcuR ,
deoR (DeoR DNA-binding transcriptional repressor) ,
dgoR (predicted DNA-binding transcriptional regulator) ,
dhaR (DhaR DNA-binding transcriptional dual regulator) ,
dicA (DicA DNA-binding transcriptional dual regulator) ,
dmlR (DmlR DNA-binding transcriptional regulator) ,
dnaA (chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator) ,
dpiA (DpiA-Pasp DNA-binding transcriptional dual regulator) ,
dsdC (DsdC DNA-binding transcriptional dual regulator) ,
ebgR (EbgR DNA-binding transcriptional repressor) ,
envR (EnvR DNA-binding transcriptional repressor) ,
envY (EnvY DNA-binding transcriptional activator) ,
eutR (putative ARAC-type regulatory protein) ,
evgA (EvgA-Phosphorylated DNA-binding transcriptional activator) ,
exuR (ExuR DNA-binding transcriptional repressor) ,
fabR (FabR DNA-binding transcriptional repressor) ,
fadR (FadR DNA-binding transcriptional dual regulator) ,
feaR (FeaR DNA-binding transcriptional activator) ,
fecI (RNA polymerase, sigma 19 factor) ,
fecR (regulator for fec operon, periplasmic) ,
fhlA (FhlA transcriptional activator) ,
fimZ (FimZ transcriptional regulator) ,
fis ,
flgM (anti-sigma factor for FliA (σ28)) ,
flhC ,
flhD ,
fliA (RNA polymerase, sigma 28 (sigma F) factor) ,
fnr ,
frlR (predicted DNA-binding transcriptional regulator) ,
frvR (FrvR predicted transcriptional regulator) ,
ftsH (ATP-dependent zinc metalloprotease FtsH) ,
fucR (FucR transcriptional activator) ,
fur ,
gadE (GadE DNA-binding transcriptional activator) ,
gadW (GadW DNA-binding transcriptional dual regulator) ,
gadX (GadX DNA-binding transcriptional dual regulator) ,
galR (GalR DNA-binding transcriptional dual regulator) ,
galS (GalS DNA-binding transcriptional dual regulator) ,
gatR_1 (negative DNA-binding transcriptional regulator of galactitol metabolism) ,
gatR_2 ,
gcvA (GcvA DNA-binding transcriptional dual regulator) ,
gcvR (GcvR predicted transcriptional regulator) ,
glcC (GlcC transcriptional dual regulator) ,
glnB (uridylyl-[protein PII]) ,
glnG (NtrC-phosphorylated monomer) ,
glpR (GlpR DNA-binding transcriptional repressor) ,
glrR (GlrR-Pasp56 DNA binding transcriptional activator) ,
gmr (cyclic di-GMP phosphodiesterase) ,
gntR (GntR DNA-binding transcriptional repressor) ,
greA (transcription elongation factor GreA) ,
greB (transcription elongation factor GreB) ,
gutM (GutM DNA-binding transcriptional activator) ,
gyrA (DNA gyrase, subunit A) ,
gyrB (DNA gyrase, subunit B) ,
hcaR (HcaR transcriptional dual regulator) ,
hdfR (HdfR DNA-binding transcriptional dual regulator) ,
hepA (RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor) ,
hha (haemolysin expression modulating protein) ,
hipB ,
hns (H-NS DNA-binding transcriptional dual regulator) ,
hscC (Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription) ,
hupA (transcriptional dual regulator HU-α (HU-2)) ,
hupB (transcriptional dual regulator HU-β, NS1 (HU-1)) ,
hycA (regulator of the transcriptional regulator FhlA) ,
hyfR (HyfR DNA-binding transcriptional activator) ,
hypT (HypT transcriptional dual regulator) ,
iclR (IclR transcriptional repressor) ,
idnR (IdnR transcriptional regulator) ,
ihfA (integration host factor (IHF), α subunit) ,
ihfB (integration host factor (IHF), β subunit) ,
ilvY (IlvY DNA-binding transcriptional dual regulator) ,
iscR (IscR DNA-binding transcriptional dual regulator) ,
kdgR (KdgR DNA-binding transcriptional repressor) ,
kdpE (KdpE-Phosphorylated) ,
lacI (LacI DNA-binding transcriptional repressor) ,
leuO (LeuO DNA-binding transcriptional dual regulator) ,
lexA ,
lldR (LldR transcriptional repressor) ,
lrhA (LrhA DNA-binding transcriptional dual regulator) ,
lrp (Lrp transcriptional dual regulator) ,
lsrR ,
lysR (LysR DNA-binding transcriptional dual regulator) ,
malI (MalI DNA-binding transcriptional repressor) ,
malT (MalT transcriptional activator) ,
marA (MarA DNA-binding transcriptional dual regulator) ,
marR (MarR transcriptional repressor) ,
mcbR (McbR DNA-binding transcriptional dual regulator) ,
melR (MelR DNA-binding transcriptional dual regulator) ,
metJ (MetJ transcriptional repressor) ,
metR ,
mfd (transcription-repair coupling factor) ,
mhpR (MhpR transcriptional activator) ,
mlc (Mlc DNA-binding transcriptional repressor) ,
mlrA (MlrA DNA binding transcriptional activator) ,
mngR ,
mntR ,
modE ,
mprA ,
mtlR (MtlR DNA-binding transcriptional repressor) ,
murR ,
nac (Nac DNA-binding transcriptional dual regulator) ,
nadR (NadR DNA-binding transcriptional repressor and NMN adenylyltransferase) ,
nagC (NagC DNA-binding transcriptional dual regulator) ,
nanR (NanR DNA-binding transcriptional dual regulator) ,
narL (NarL-Phosphorylated DNA-binding transcriptional dual regulator) ,
narP (NarP-Phosphorylated DNA-binding transcriptional dual regulator) ,
nhaR (NhaR transcriptional activator) ,
nikR (NikR DNA-binding transcriptional repressor, Ni-binding) ,
norR (NorR DNA-binding transcriptional dual regulator) ,
nsrR ,
nusA (transcription termination/antitermination L factor) ,
nusB (transcription antitermination protein NusB) ,
nusG (transcription termination factor NusG) ,
ompR (OmpR-Phosphorylated) ,
osmE (osmotically inducible protein OsmE) ,
oxyR (OxyR DNA-binding transcriptional dual regulator) ,
paaX ,
pdhR (PdhR DNA-binding transcriptional dual regulator) ,
pepA (aminopeptidase A/I) ,
pgrR (PgrR DNA-binding transcriptional repressor) ,
phnF (PhnF predicted transcriptional regulator) ,
phoB (PhoB-Phosphorylated DNA-binding transcriptional dual regulator) ,
phoP (PhoP-Phosphorylated DNA-binding transcriptional dual regulator) ,
prpR (PrpR DNA-binding transcriptional dual regulator) ,
pspA (regulatory protein for the phage shock protein operon) ,
pspB (stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair) ,
pspC (PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair) ,
pspF (PspF transcriptional dual regulator) ,
purR ,
putA (fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase) ,
qseB (QseB-Phosphorylated DNA-binding transcriptional activator) ,
rbsR (RbsR DNA-binding transcriptional dual regulator) ,
rclR (RclR DNA-binding transcriptional activator) ,
rcsA (positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression) ,
rcsB (RcsB-Pasp56) ,
relB (RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor) ,
rfaH (RfaH transcriptional antiterminator) ,
rhaR (RhaR transcriptional activator) ,
rhaS ,
rho (transcription termination factor Rho monomer; polarity suppressor) ,
rhoL (rho operon leader peptide) ,
rob (Rob DNA-binding transcriptional activator) ,
rof (modulator of Rho-dependent transcription termination) ,
rpiR (AlsR DNA-binding transcriptional repressor) ,
rpoA (RNA polymerase, α subunit) ,
rpoB (RNA polymerase, β subunit) ,
rpoC (RNA polymerase, β' subunit) ,
rpoD (RNA polymerase, sigma 70 (sigma D) factor) ,
rpoE (RNA polymerase, sigma 24 (sigma E) factor) ,
rpoH (RNA polymerase, sigma 32 (sigma H) factor) ,
rpoN (RNA polymerase, sigma 54 (sigma N) factor) ,
rpoZ (RNA polymerase, ω subunit) ,
rsd (regulator of σ70D), stationary phase protein) ,
rseA (anti-sigma factor) ,
rseB ,
rseC (SoxR and σE factor regulatory protein RseC) ,
rstA (RstA-Phosphorylated DNA-binding transcriptional regulator) ,
rtcR (RtcR DNA-binding transcriptional activator) ,
rutR (RutR DNA-binding transcriptional dual regulator) ,
sdiA (SdiA DNA-binding transcriptional dual regulator) ,
sfsB (Nlp transcriptional regulator) ,
sgcR (KpLE2 phage-like element; predicted DNA-binding transcriptional regulator) ,
slyA (SlyA DNA-binding transcriptional activator) ,
soxR (SoxR DNA-binding transcriptional dual regulator) ,
soxS (SoxS DNA-binding transcriptional dual regulator) ,
srlR (GutR DNA-binding transcriptional repressor) ,
sspA (stringent starvation protein A) ,
tdcA (TdcA DNA-binding transcriptional activator) ,
tdcR (TdcR DNA-binding transcriptional activator) ,
topA (DNA topoisomerase I) ,
topB (DNA topoisomerase III) ,
torR ,
treR (TreR transcriptional repressor) ,
trpR ,
ttdR (Dan) ,
tyrR (TyrR DNA-binding transcriptional dual regulator) ,
uhpA (UhpA-Phosphorylated) ,
uidR (UidR DNA-binding transcriptional repressor) ,
ulaR (UlaR DNA-binding transcriptional repressor) ,
umuD (SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC) ,
uvrY (UvrY- Phosphorylated transcriptional regulator) ,
uxuR (UxuR DNA-binding transcriptional repressor) ,
xapR (XapR transcriptional activator) ,
xylR (XylR transcriptional activator) ,
yafC (predicted DNA-binding transcriptional regulator LYSR-type) ,
yagI (CP4-6 prophage; predicted DNA-binding transcriptional regulator) ,
yahB (predicted DNA-binding transcriptional regulator, LysR-type) ,
yahD (predicted transcriptional regulator with ankyrin domain) ,
yaiV (predicted DNA-binding transcriptional regulator) ,
yaiW (surface exposed outer membrane lipoprotein) ,
ybaO (predicted DNA-binding transcriptional regulator) ,
ybaQ (predicted DNA-binding transcriptional regulator) ,
ybdO (predicted DNA-binding transcriptional regulator LYSR-type) ,
ybeF (predicted DNA-binding transcriptional regulator, LYSR-type) ,
ybhD (predicted DNA-binding transcriptional regulator) ,
ybiH (predicted DNA-binding transcriptional regulator) ,
ycaN (putative transcriptional regulator LYSR-type) ,
yciT (DNA-binding transcriptional regulator) ,
ycjW (predicted DNA-binding transcriptional regulator, LacI type) ,
ydaM (diguanylate cyclase) ,
ydcI (YdcI DNA-binding transcriptional repressor) ,
ydcR (fused predicted DNA-binding transcriptional regulator and predicted amino transferase) ,
ydeO (YdeO DNA-binding transcriptional dual regulator) ,
ydfH (YdfH DNA-binding transcriptional repressor) ,
ydhB (protein with similarity to transcriptional regulators) ,
ydiP (predicted DNA-binding transcriptional regulator) ,
ydjF (predicted DNA-binding transcriptional regulator) ,
yeaM (predicted DNA-binding transcriptional regulator) ,
yebK (predicted DNA-binding transcriptional regulator) ,
yedW (predicted DNA-binding response regulator in two-component system with YedV) ,
yeeY (predicted DNA-binding transcriptional regulator) ,
yegW (predicted DNA-binding transcriptional regulator) ,
yeiE (LYSR-type transcriptional regulator) ,
yeiL (YeiL DNA-binding transcriptional activator) ,
yfaX (predicted DNA-binding transcriptional regulator) ,
yfeR (predicted DNA-binding transcriptional regulator, LYSR-type) ,
yfhH (predicted DNA-binding transcriptional regulator) ,
yfiE (predicted DNA-binding transcriptional regulator LYSR-type) ,
ygbI (predicted DNA-binding transcriptional regulator, DEOR-type) ,
ygeK (predicted DNA-binding transcriptional regulator) ,
ygeV (putative transcriptional regulator) ,
ygfI (predicted DNA-binding transcriptional regulator LYSR-type) ,
yghO (predicted DNA-binding transcriptional regulator) ,
ygiV (YgiV DNA-binding transcriptional repressor) ,
yhaJ (predicted DNA-binding transcriptional regulator LYSR-type) ,
yhcF (predicted transcriptional regulator) ,
yhjB (predicted DNA-binding response regulator in two-component regulatory system) ,
yhjC (predicted DNA-binding transcriptional regulator) ,
yiaJ (YiaJ DNA-binding transcriptional repressor) ,
yiaU (predicted DNA-binding transcriptional regulator, LysR-type) ,
yidF (predicted DNA-binding transcriptional regulator) ,
yidL (putative ARAC-type regulatory protein) ,
yidP (predicted DNA-binding transcriptional regulator) ,
yidZ (putative transcriptional regulator LysR-type) ,
yihL (YihL putative transcriptional regulator) ,
yihW (predicted DNA-binding transcriptional regulator) ,
yiiE (predicted transcriptional regulator) ,
yijO (predicted DNA-binding transcriptional regulator) ,
yjdC (predicted transcriptional regulator) ,
yjhI (KpLE2 phage-like element; predicted DNA-binding transcriptional regulator) ,
yjiR (putative regulator) ,
ykgA (predicted DNA-binding transcriptional regulator) ,
yneJ (predicted DNA-binding transcriptional regulator, LysR-type) ,
ypdB (YpdB-phosphorylated DNA binding transcriptional activator) ,
ypdC (predicted ARAC-type regulatory protein) ,
yqgF (predicted transcription antitermination factor) ,
yqhC (YqhC DNA-binding transcriptional activator) ,
yqjI (YqjI DNA-binding transcriptional repressor) ,
ytfA (predicted transcriptional regulator) ,
zntR (ZntR transcriptional activator) ,
zraR (ZraR-Phosphorylated DNA-binding transcriptional activator) ,
zur


Report Errors or Provide Feedback
Please cite the following article in publications resulting from the use of EcoCyc: Nucleic Acids Research 41:D605-12 2013
Page generated by SRI International Pathway Tools version 18.5 on Sat Nov 22, 2014, biocyc14.